Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   R0492_RS09280 Genome accession   NZ_CP136649
Coordinates   1802023..1802802 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain NXU98     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797023..1807802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS09260 trmFO 1797720..1799024 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  R0492_RS09265 xerC 1799091..1800005 (+) 915 WP_011197974.1 tyrosine recombinase XerC -
  R0492_RS09270 hslV 1800019..1800564 (+) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  R0492_RS09275 hslU 1800581..1801984 (+) 1404 WP_011197975.1 HslU--HslV peptidase ATPase subunit -
  R0492_RS09280 codY 1802023..1802802 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  R0492_RS09285 flgB 1803156..1803545 (+) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  R0492_RS09290 flgC 1803545..1803997 (+) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  R0492_RS09295 fliE 1804011..1804328 (+) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  R0492_RS09300 fliF 1804379..1805980 (+) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  R0492_RS09305 fliG 1805994..1807010 (+) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  R0492_RS09310 fliH 1806994..1807761 (+) 768 WP_016885763.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=892218 R0492_RS09280 WP_003181756.1 1802023..1802802(+) (codY) [Bacillus licheniformis strain NXU98]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=892218 R0492_RS09280 WP_003181756.1 1802023..1802802(+) (codY) [Bacillus licheniformis strain NXU98]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467