Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   R0513_RS06895 Genome accession   NZ_CP136638
Coordinates   1318596..1319564 (+) Length   322 a.a.
NCBI ID   WP_002868462.1    Uniprot ID   A0A5Z0B9N9
Organism   Campylobacter jejuni strain S2-20     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1313596..1324564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS06870 (R0513_06870) cdsA 1314506..1315231 (-) 726 WP_041160210.1 phosphatidate cytidylyltransferase -
  R0513_RS06875 (R0513_06875) - 1315240..1315578 (-) 339 WP_002852397.1 hypothetical protein -
  R0513_RS06880 (R0513_06880) - 1315580..1316887 (-) 1308 WP_057036215.1 NFACT RNA binding domain-containing protein -
  R0513_RS06885 (R0513_06885) mobA 1316949..1317524 (+) 576 WP_002858185.1 molybdenum cofactor guanylyltransferase -
  R0513_RS06890 (R0513_06890) pldA 1317521..1318510 (+) 990 WP_057036216.1 phospholipase A -
  R0513_RS06895 (R0513_06895) ceuB 1318596..1319564 (+) 969 WP_002868462.1 ABC transporter permease Machinery gene
  R0513_RS06900 (R0513_06900) ceuC 1319557..1320495 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  R0513_RS06905 (R0513_06905) ceuD 1320492..1321247 (+) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  R0513_RS06910 (R0513_06910) ceuB 1321260..1322252 (+) 993 WP_002859640.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R0513_RS06915 (R0513_06915) - 1322410..1322631 (+) 222 WP_041160211.1 hypothetical protein -
  R0513_RS06920 (R0513_06920) - 1322632..1322913 (+) 282 WP_041160212.1 type II toxin-antitoxin system RelE/ParE family toxin -
  R0513_RS06925 (R0513_06925) - 1323136..1323366 (-) 231 WP_041160213.1 hypothetical protein -
  R0513_RS06930 (R0513_06930) - 1323597..1323965 (+) 369 WP_041160214.1 hypothetical protein -
  R0513_RS06935 (R0513_06935) - 1324069..1324308 (+) 240 WP_002874728.1 hypothetical protein -
  R0513_RS06940 (R0513_06940) - 1324321..1324461 (+) 141 WP_002874727.1 hypothetical protein -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35467.43 Da        Isoelectric Point: 9.6678

>NTDB_id=892089 R0513_RS06895 WP_002868462.1 1318596..1319564(+) (ceuB) [Campylobacter jejuni strain S2-20]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTIAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=892089 R0513_RS06895 WP_002868462.1 1318596..1319564(+) (ceuB) [Campylobacter jejuni strain S2-20]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTATAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains


Predicted by InterproScan.

(15-317)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5Z0B9N9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991