Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R0513_RS06850 Genome accession   NZ_CP136638
Coordinates   1310523..1311038 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain S2-20     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1305523..1316038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS06835 (R0513_06835) - 1305632..1307449 (-) 1818 WP_318307845.1 motility associated factor glycosyltransferase family protein -
  R0513_RS06840 (R0513_06840) - 1307449..1309269 (-) 1821 WP_088585157.1 motility associated factor glycosyltransferase family protein -
  R0513_RS06845 (R0513_06845) - 1309281..1310523 (-) 1243 Protein_1332 DUF2920 family protein -
  R0513_RS06850 (R0513_06850) ctsG 1310523..1311038 (-) 516 WP_002799196.1 type II secretion system protein Machinery gene
  R0513_RS06855 (R0513_06855) tsaD 1311039..1312046 (-) 1008 WP_002860794.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R0513_RS06860 (R0513_06860) - 1312043..1313437 (-) 1395 WP_002914004.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R0513_RS06865 (R0513_06865) dxr 1313439..1314509 (-) 1071 WP_041160209.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R0513_RS06870 (R0513_06870) cdsA 1314506..1315231 (-) 726 WP_041160210.1 phosphatidate cytidylyltransferase -
  R0513_RS06875 (R0513_06875) - 1315240..1315578 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=892088 R0513_RS06850 WP_002799196.1 1310523..1311038(-) (ctsG) [Campylobacter jejuni strain S2-20]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=892088 R0513_RS06850 WP_002799196.1 1310523..1311038(-) (ctsG) [Campylobacter jejuni strain S2-20]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942