Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   R0513_RS05580 Genome accession   NZ_CP136638
Coordinates   1052704..1053006 (+) Length   100 a.a.
NCBI ID   WP_002875928.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S2-20     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1047704..1058006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS05555 (R0513_05555) rpsR 1048067..1048327 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R0513_RS05560 (R0513_05560) lon 1048387..1050762 (-) 2376 WP_002852988.1 endopeptidase La -
  R0513_RS05565 (R0513_05565) - 1050779..1051426 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  R0513_RS05570 (R0513_05570) fliW 1051587..1051976 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R0513_RS05575 (R0513_05575) proC 1051976..1052707 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  R0513_RS05580 (R0513_05580) ctsT 1052704..1053006 (+) 303 WP_002875928.1 hypothetical protein Machinery gene
  R0513_RS05585 (R0513_05585) - 1053003..1053665 (+) 663 WP_002858296.1 hypothetical protein -
  R0513_RS05590 (R0513_05590) - 1053662..1054114 (+) 453 WP_002859148.1 hypothetical protein -
  R0513_RS05595 (R0513_05595) hemD 1054111..1054740 (-) 630 WP_002869541.1 uroporphyrinogen-III synthase -
  R0513_RS05600 (R0513_05600) thiE 1054718..1055350 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  R0513_RS05605 (R0513_05605) thiD 1055340..1056152 (-) 813 WP_002869542.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  R0513_RS05610 (R0513_05610) - 1056149..1056835 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  R0513_RS05615 (R0513_05615) - 1056832..1057593 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12161.32 Da        Isoelectric Point: 9.0653

>NTDB_id=892082 R0513_RS05580 WP_002875928.1 1052704..1053006(+) (ctsT) [Campylobacter jejuni strain S2-20]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFKRLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=892082 R0513_RS05580 WP_002875928.1 1052704..1053006(+) (ctsT) [Campylobacter jejuni strain S2-20]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTAAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98