Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RAS18_RS13510 Genome accession   NZ_CP136635
Coordinates   2693061..2695421 (-) Length   786 a.a.
NCBI ID   WP_406620691.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2688061..2700421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS13490 - 2688115..2689680 (+) 1566 WP_406620690.1 SH3 domain-containing protein -
  RAS18_RS13495 dtd 2689714..2690157 (-) 444 WP_010789335.1 D-aminoacyl-tRNA deacylase -
  RAS18_RS13500 relA 2690170..2692374 (-) 2205 WP_003325298.1 GTP diphosphokinase -
  RAS18_RS13505 - 2692543..2693055 (-) 513 WP_003325297.1 adenine phosphoribosyltransferase -
  RAS18_RS13510 recJ 2693061..2695421 (-) 2361 WP_406620691.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RAS18_RS13515 - 2695489..2695827 (-) 339 WP_406620692.1 lipopolysaccharide assembly LapA domain-containing protein -
  RAS18_RS13520 - 2695904..2696401 (-) 498 WP_003325293.1 cation:proton antiporter regulatory subunit -
  RAS18_RS13525 secDF 2696599..2698818 (-) 2220 WP_106044039.1 protein translocase subunit SecDF -
  RAS18_RS13530 - 2698857..2699153 (-) 297 WP_003325291.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88152.87 Da        Isoelectric Point: 4.9308

>NTDB_id=892049 RAS18_RS13510 WP_406620691.1 2693061..2695421(-) (recJ) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MLASKMRWEIQRPDQDKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLNTKEADFYDPFEMKGMKEAVERIKQAISQQ
EPIMIYGDYDADGVTSTSVMLKALQKLSAHVDFYIPDRFKEGYGPNEQAFRSIKEQGFSLIITVDTGIAAVHEAEAAKEL
GLDVIITDHHEPGPVLPDVCAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGALPEDLLDLAAIGTIADLVPLHDENRLL
ATLGMQKLRMTNRPGLKALIKLSGGDIGQANEETIGFQLAPRLNAVGRIEQADPAVHLLMTEDEFEADELATEIDQLNKE
RQKIVSKMTDEAIEMVEQQGLNGSAIVVAKPGWNPGVVGIVASKLVDRFYRPAVVLGIDEEKGIAKGSARSIKGFDLFKS
LSSCRDILPHFGGHPMAAGMTLSADDVSDLRDRLNQIADETLTEEDFIPVQEIDLVCSVEDITVESISEINLLSPFGMQN
PKPHVMVENALLEDVRRIGANKNHIKMTVKDQSAKLDCVGFHKGELETGIVPGSRISLVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEETIVALPSEKRVIVCFKEETKQLLQNEELRLQLHTVSSEQEARDLELDSAYVVFLDAPPSLDL
LSSLVEGKRPERVYFIFMNNEEHFLSAFPTRDYFKWYYGFLLKRGTFDLKTHGSELAKHKGWTKDTINFMTKVFFDLGFV
RIENGVLSVIYDAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKHDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=892049 RAS18_RS13510 WP_406620691.1 2693061..2695421(-) (recJ) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGTTAGCGTCAAAAATGCGTTGGGAAATACAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCTCTGCTTGTAAAAAGAGGATTTGATACAGCGGAAAGCGCGAGGCTGTTTTTAAATACAAAAG
AAGCTGATTTTTATGATCCCTTTGAGATGAAGGGCATGAAAGAAGCGGTTGAGCGCATTAAACAGGCCATTTCACAGCAA
GAGCCCATTATGATATACGGAGATTATGATGCGGACGGCGTCACCAGTACGTCCGTCATGCTGAAAGCATTACAAAAGCT
CTCGGCTCACGTTGACTTTTACATACCTGACCGGTTTAAAGAGGGCTACGGACCGAATGAGCAAGCCTTCCGCTCGATTA
AAGAGCAAGGCTTCTCCCTTATTATCACGGTTGATACGGGGATTGCGGCTGTTCATGAAGCAGAGGCAGCGAAGGAACTA
GGACTGGATGTCATCATCACTGACCACCATGAGCCCGGCCCTGTGCTGCCTGATGTGTGTGCCATTGTTCACCCGAAGCA
GCCGGGATGCACCTATCCGTTTAAGGAGCTTGCCGGAGTGGGTGTGGCGTTTAAGCTTGCACATGCTCTTTTAGGCGCTT
TGCCTGAGGACCTGCTCGATTTGGCGGCAATCGGAACTATAGCTGATCTTGTGCCGCTGCATGATGAAAACAGATTATTA
GCAACGTTGGGCATGCAGAAGCTTCGAATGACAAACCGGCCGGGGCTAAAAGCACTGATTAAACTGTCGGGCGGTGACAT
CGGACAAGCGAATGAAGAAACAATCGGCTTTCAGCTTGCACCGAGGCTTAATGCTGTCGGGAGAATTGAACAGGCTGATC
CGGCTGTCCATCTGCTGATGACAGAGGATGAGTTCGAAGCGGATGAGCTTGCAACTGAAATCGACCAGCTCAACAAAGAG
CGCCAAAAGATTGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAGCAGCAAGGGCTCAATGGATCTGCCATCGT
AGTGGCAAAGCCCGGCTGGAACCCCGGGGTTGTCGGCATTGTGGCTTCAAAGCTTGTTGACCGTTTTTACCGTCCGGCCG
TTGTTCTTGGAATTGATGAAGAAAAGGGCATCGCGAAAGGATCGGCTCGAAGCATTAAAGGCTTTGATTTATTTAAAAGC
CTTTCTTCTTGCAGAGACATCCTTCCCCATTTCGGGGGACATCCGATGGCTGCAGGAATGACACTTTCTGCCGATGATGT
ATCTGACTTGAGGGACAGGCTCAATCAAATCGCGGATGAGACGCTTACAGAAGAGGATTTTATTCCGGTTCAGGAAATTG
ATCTCGTATGCAGCGTAGAGGATATTACGGTTGAGAGCATTTCTGAAATCAATCTCCTGTCTCCCTTTGGCATGCAGAAT
CCGAAACCGCATGTGATGGTGGAAAATGCGCTTTTGGAAGACGTGCGGAGAATCGGAGCCAATAAAAACCATATCAAAAT
GACGGTCAAAGACCAATCGGCAAAGCTTGATTGTGTCGGCTTTCATAAAGGGGAGCTTGAGACAGGTATTGTGCCTGGTT
CAAGAATCTCATTAGTCGGCGAAATGTCGATTAATGAATGGAATAACAGAAAAAAACCCCAGTTAATGATAAAGGATGCA
GCCGTTTCTGAATGGCAGCTGTTTGACTTGCGTGGAAAACGTACGTGGGAAGAGACAATAGTTGCGCTTCCGTCTGAAAA
ACGGGTCATTGTTTGCTTTAAGGAGGAAACGAAACAGCTGCTTCAAAACGAAGAGCTGCGCCTTCAGCTTCACACGGTGA
GCTCGGAGCAGGAAGCCAGAGACCTTGAACTGGACAGCGCGTATGTGGTATTCCTTGATGCGCCGCCTTCATTAGATCTG
CTTTCAAGTTTGGTAGAAGGAAAGAGACCCGAGCGTGTCTATTTTATCTTTATGAATAACGAGGAGCATTTTCTGTCAGC
ATTTCCGACCCGGGATTATTTTAAATGGTACTACGGTTTCTTGTTGAAAAGAGGAACTTTCGATCTGAAAACACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGACAAAAGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AGAATAGAGAATGGCGTGCTGTCTGTTATTTATGATGCGAAAAAACGCGATTTGACAGACTCGCAAACCTATCAGGCAAA
ACAGCAGCTGATGGAACTGGATCAGAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACATGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

84.733

100

0.847