Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RAS18_RS08690 Genome accession   NZ_CP136635
Coordinates   1694025..1694804 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689025..1699804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS08670 trmFO 1689720..1691027 (+) 1308 WP_061571556.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RAS18_RS08675 xerC 1691094..1692008 (+) 915 WP_010788602.1 tyrosine recombinase XerC -
  RAS18_RS08680 clpQ 1692022..1692567 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  RAS18_RS08685 hslU 1692575..1693987 (+) 1413 WP_268517949.1 HslU--HslV peptidase ATPase subunit -
  RAS18_RS08690 codY 1694025..1694804 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RAS18_RS08695 flgB 1695227..1695616 (+) 390 WP_061571558.1 flagellar basal body rod protein FlgB -
  RAS18_RS08700 flgC 1695616..1696065 (+) 450 WP_061571559.1 flagellar basal body rod protein FlgC -
  RAS18_RS08705 fliE 1696076..1696396 (+) 321 WP_150223845.1 flagellar hook-basal body complex protein FliE -
  RAS18_RS08710 fliF 1696440..1698047 (+) 1608 WP_061571561.1 flagellar basal-body MS-ring/collar protein FliF -
  RAS18_RS08715 fliG 1698060..1699076 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=892029 RAS18_RS08690 WP_003328951.1 1694025..1694804(+) (codY) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=892029 RAS18_RS08690 WP_003328951.1 1694025..1694804(+) (codY) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCAGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTAAGCCGCAGAGGAAAGCTGTTAGGTTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCAGTCGAAAACAGAGATCTGTTCCA
AGCTGGTTTGACAACAATTGTACCAATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGATGATGATCTGATTCTTGCTGAATACGGAGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCGATCAGTTCTCTTTCTTACAGTGAACTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GCTCCGTAATTGTCAATGCACTCAGAAAGCTGGAAAGTGCCGGTGTCATTGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAACAACAAGTTCTTGATTGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471