Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RAS18_RS08660 Genome accession   NZ_CP136635
Coordinates   1686481..1687380 (+) Length   299 a.a.
NCBI ID   WP_061571555.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1681481..1692380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS08640 - 1682131..1683879 (+) 1749 WP_106044959.1 hypothetical protein -
  RAS18_RS08645 - 1683876..1684157 (+) 282 WP_061571554.1 FlhB-like flagellar biosynthesis protein -
  RAS18_RS08650 sucC 1684331..1685488 (+) 1158 WP_010788598.1 ADP-forming succinate--CoA ligase subunit beta -
  RAS18_RS08655 sucD 1685517..1686419 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  RAS18_RS08660 dprA 1686481..1687380 (+) 900 WP_061571555.1 DNA-processing protein DprA Machinery gene
  RAS18_RS08665 topA 1687569..1689644 (+) 2076 WP_010788600.1 type I DNA topoisomerase -
  RAS18_RS08670 trmFO 1689720..1691027 (+) 1308 WP_061571556.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RAS18_RS08675 xerC 1691094..1692008 (+) 915 WP_010788602.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33187.27 Da        Isoelectric Point: 9.6707

>NTDB_id=892028 RAS18_RS08660 WP_061571555.1 1686481..1687380(+) (dprA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDPHPIHAITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPSWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPRKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=892028 RAS18_RS08660 WP_061571555.1 1686481..1687380(+) (dprA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
TTGGACCAGGCGTCTGCCTGTTTACTCATTTGCAGCATCAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCCGCACCCAATACACGCCATCACTTCCGGTAAAATAAAAGCCGCCGCAC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATACCCGTCATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTTATAAAAGGCCGGAAAATTGGAGTGGTAGGTACGCGAAATCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTTACAAAAGAGCTTGCAGGCAACCAGTGGATCATTGTCAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATTTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCGAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGATTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCCGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAATCTGTACAGTCCGCTGAGGATATTTACAGTGAGTTATCGGAAGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

73.579

100

0.736