Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AAF758_RS04915 Genome accession   NZ_CP152119
Coordinates   1008365..1010107 (-) Length   580 a.a.
NCBI ID   WP_342593786.1    Uniprot ID   -
Organism   Streptococcus suis strain Ss2301     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003365..1015107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAF758_RS04890 (AAF758_04890) - 1004005..1004547 (-) 543 WP_012775148.1 hypothetical protein -
  AAF758_RS04895 (AAF758_04895) - 1004693..1005037 (-) 345 WP_012028202.1 hypothetical protein -
  AAF758_RS04900 (AAF758_04900) - 1005168..1005968 (+) 801 WP_125070203.1 XRE family transcriptional regulator -
  AAF758_RS04905 (AAF758_04905) mutY 1006651..1007811 (-) 1161 WP_024403429.1 A/G-specific adenine glycosylase -
  AAF758_RS04910 (AAF758_04910) - 1007989..1008381 (-) 393 WP_029693807.1 PaaI family thioesterase -
  AAF758_RS04915 (AAF758_04915) rcrQ 1008365..1010107 (-) 1743 WP_342593786.1 ABC transporter ATP-binding protein Regulator
  AAF758_RS04920 (AAF758_04920) - 1010094..1011833 (-) 1740 WP_012027039.1 ABC transporter ATP-binding protein -
  AAF758_RS04925 (AAF758_04925) pta 1011835..1012809 (-) 975 WP_012775151.1 phosphate acetyltransferase -
  AAF758_RS04930 (AAF758_04930) - 1012827..1013720 (-) 894 WP_012027041.1 RluA family pseudouridine synthase -
  AAF758_RS04935 (AAF758_04935) - 1013720..1014538 (-) 819 WP_012775152.1 NAD kinase -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64521.71 Da        Isoelectric Point: 5.7599

>NTDB_id=891639 AAF758_RS04915 WP_342593786.1 1008365..1010107(-) (rcrQ) [Streptococcus suis strain Ss2301]
MRQSSFKELVRLVLHQPLRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANGQVLLGILGKMVMVILLNTLVQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRQSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LVVVALTPVSLLVARYIAKKSYGYYRQQTQARGKQSQLLEESISQLTLVQSFNAQEQFTQGFQVVNDQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGNFTVGYLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
NQAERKIDSEELKGAISFDNVSFSYSPDRSLIEHLDIDVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGKIALDGVPI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQRTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=891639 AAF758_RS04915 WP_342593786.1 1008365..1010107(-) (rcrQ) [Streptococcus suis strain Ss2301]
ATGAGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTCTACACCAGCCCCTTCGAATGTCCTTGATGTTGGTGGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTTGATGCAGTATTGATAGCAAATGGTC
AGGTCTTGCTCGGTATCTTAGGCAAAATGGTGATGGTTATCTTGCTTAATACACTGGTGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTACGGAATGGTGGCCGACTTGCGTGAACAGGTCTATGTGAAGCTGCACCAGATGCCCTTATCTTA
TCTTGATCGTCAATCAGTCGGTGACTTGGTGGCTCGTTTTTCAAGTGATAGTGAGCAATTAACAAATGGTCTCTTGATGA
TTTTCAATCAATTTTTCATTGGTATCTTGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGGTTGTTGTTGCCCTGACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGACA
ACAGACTCAGGCACGTGGGAAGCAATCTCAGCTTTTGGAAGAGTCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
CTCAAGAGCAGTTTACGCAAGGGTTTCAAGTTGTGAATGACCAGTATGCGACCTATTCCCAACAGGCCATCTTTGCCTCT
TCAACGGTCAATCCAAGTACGCGGTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCGCTGAGAATTAT
GGCAGGAAATTTTACAGTGGGATATCTGACAACCTTCCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGGCTGTTTGCTATCTTGGCTCTAGATAGCATTGAC
AATCAGGCTGAGCGGAAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGACAATGTGTCTTTCTCCTATAGCCC
TGACCGTTCTCTGATTGAACATCTGGACATTGATGTCAAAGCTGGACAAAAGGTAGCCATTGTTGGACCTACTGGTGCTG
GTAAATCAACCATGATTAACCTTCTTATGCGTTTCTACGATGTGACGGCTGGTAAAATTGCTCTAGATGGGGTTCCGATT
AGCCAGTACAGTCGTGAGGATCTCCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCCAATGCAGACTTCT
TTATTCGACAACTTCCGCAGGGTTACGATACGGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTCAAGATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGTTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCGGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.977

97.759

0.381