Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   KNP07_RS27055 Genome accession   NZ_CP152075
Coordinates   5831166..5831690 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain NCTR 501     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5826166..5836690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNP07_RS27040 (KNP07_27045) aroB 5827282..5828388 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  KNP07_RS27045 (KNP07_27050) aroK 5828438..5828956 (-) 519 WP_003095833.1 shikimate kinase AroK -
  KNP07_RS27050 (KNP07_27055) pilQ 5828968..5831112 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  KNP07_RS27055 (KNP07_27060) comL/pilP 5831166..5831690 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  KNP07_RS27060 (KNP07_27065) pilO 5831687..5832310 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  KNP07_RS27065 (KNP07_27070) pilN 5832307..5832903 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  KNP07_RS27070 (KNP07_27075) pilM 5832903..5833967 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  KNP07_RS27075 (KNP07_27080) - 5834152..5836623 (+) 2472 WP_058169786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=891565 KNP07_RS27055 WP_003095836.1 5831166..5831690(-) (comL/pilP) [Pseudomonas aeruginosa strain NCTR 501]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=891565 KNP07_RS27055 WP_003095836.1 5831166..5831690(-) (comL/pilP) [Pseudomonas aeruginosa strain NCTR 501]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362