Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCU30_RS11505 Genome accession   NZ_AP024887
Coordinates   2460344..2461054 (+) Length   236 a.a.
NCBI ID   WP_095532937.1    Uniprot ID   -
Organism   Vibrio palustris strain CECT 9027     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2455344..2466054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU30_RS11485 greB 2455580..2456065 (-) 486 WP_077315169.1 transcription elongation factor GreB -
  OCU30_RS11490 - 2456462..2458783 (+) 2322 WP_077315170.1 Tex family protein -
  OCU30_RS11495 - 2458865..2459338 (-) 474 WP_077315171.1 ATP-dependent Lon protease -
  OCU30_RS11500 bioH 2459456..2460259 (-) 804 WP_077315172.1 pimeloyl-ACP methyl ester esterase BioH -
  OCU30_RS11505 comF 2460344..2461054 (+) 711 WP_095532937.1 ComF family protein Machinery gene
  OCU30_RS11510 nfuA 2461149..2461736 (+) 588 WP_095532938.1 Fe-S biogenesis protein NfuA -
  OCU30_RS11515 nudE 2461819..2462376 (+) 558 WP_077315174.1 ADP compounds hydrolase NudE -
  OCU30_RS11520 cysQ 2462404..2463231 (+) 828 WP_077315175.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCU30_RS11525 - 2463297..2464055 (-) 759 WP_077315176.1 type II secretion system protein N -
  OCU30_RS11530 - 2464057..2464566 (-) 510 WP_077315177.1 type II secretion system protein M -
  OCU30_RS11535 gspL 2464576..2465790 (-) 1215 WP_077315178.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27127.73 Da        Isoelectric Point: 9.5962

>NTDB_id=89154 OCU30_RS11505 WP_095532937.1 2460344..2461054(+) (comF) [Vibrio palustris strain CECT 9027]
MLANWLQKNIKRQIPQCCHLCGLSLDSPHALSLCSACRLALQPTPRCQRCGLTTAIPTKQCGRCLKEPPWWQALYCIGDY
RYPLTQYIHQLKYQRQFWLAKPLAQQLSTVITEPAPVLCAVPMHWRRYLWRGFNQSDQLAKQLAQHLQVQYWPHLFHRQR
ATAPQKGLHRKQRRHNLYGAFGFTTPIYALGSHVAIIDDVVTTGSTLKPLCQLLTKVGVTQIDVYCLCRTPEPSEP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=89154 OCU30_RS11505 WP_095532937.1 2460344..2461054(+) (comF) [Vibrio palustris strain CECT 9027]
ATGTTAGCGAATTGGTTACAAAAAAACATTAAAAGACAGATACCGCAATGCTGTCATTTATGCGGTTTATCTCTCGACAG
TCCTCACGCGCTATCACTGTGCTCTGCGTGTCGATTAGCCTTACAGCCCACTCCCCGCTGTCAACGCTGCGGCTTAACGA
CCGCCATACCAACTAAACAATGCGGACGCTGCCTAAAAGAGCCACCATGGTGGCAGGCGCTGTATTGCATCGGTGACTAC
CGCTACCCGCTCACTCAGTACATTCATCAACTCAAATATCAGCGGCAATTTTGGTTAGCCAAGCCGCTCGCTCAGCAACT
CTCCACTGTGATTACTGAACCCGCTCCTGTTTTATGCGCCGTTCCTATGCATTGGCGGCGTTACCTTTGGCGCGGATTTA
ATCAAAGCGATCAACTCGCCAAGCAATTAGCGCAACATTTACAAGTACAATATTGGCCGCATTTATTTCATCGCCAGCGG
GCTACCGCACCGCAAAAAGGCTTACATCGAAAGCAAAGGCGACACAATTTGTATGGCGCGTTTGGCTTTACCACACCGAT
TTATGCCTTAGGGTCTCATGTTGCAATTATTGATGATGTTGTCACGACTGGCAGCACTCTAAAGCCACTTTGCCAGCTAC
TTACCAAGGTTGGAGTGACTCAGATTGATGTCTATTGCCTATGCAGAACGCCAGAACCCAGCGAACCTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(177-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.319

99.576

0.551
  comF Vibrio campbellii strain DS40M4

43.983

100

0.449

Multiple sequence alignment