Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RYX39_RS08940 Genome accession   NZ_CP136430
Coordinates   1722749..1723528 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus halotolerans strain Q2H2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1717749..1728528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS08920 (RYX39_08920) trmFO 1718443..1719750 (+) 1308 WP_101861212.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RYX39_RS08925 (RYX39_08925) xerC 1719818..1720732 (+) 915 WP_316961231.1 tyrosine recombinase XerC -
  RYX39_RS08930 (RYX39_08930) clpQ 1720745..1721290 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  RYX39_RS08935 (RYX39_08935) hslU 1721307..1722710 (+) 1404 WP_044155901.1 HslU--HslV peptidase ATPase subunit -
  RYX39_RS08940 (RYX39_08940) codY 1722749..1723528 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RYX39_RS08945 (RYX39_08945) flgB 1723908..1724297 (+) 390 WP_010334244.1 flagellar basal body rod protein FlgB -
  RYX39_RS08950 (RYX39_08950) flgC 1724297..1724749 (+) 453 WP_024121394.1 flagellar basal body rod protein FlgC -
  RYX39_RS08955 (RYX39_08955) fliE 1724760..1725080 (+) 321 WP_024121395.1 flagellar hook-basal body complex protein FliE -
  RYX39_RS08960 (RYX39_08960) fliF 1725126..1726736 (+) 1611 WP_316961232.1 flagellar basal-body MS-ring/collar protein FliF -
  RYX39_RS08965 (RYX39_08965) fliG 1726749..1727765 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  RYX39_RS08970 (RYX39_08970) fliH 1727758..1728510 (+) 753 WP_316961233.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=891026 RYX39_RS08940 WP_003220850.1 1722749..1723528(+) (codY) [Bacillus halotolerans strain Q2H2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=891026 RYX39_RS08940 WP_003220850.1 1722749..1723528(+) (codY) [Bacillus halotolerans strain Q2H2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTGCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAAGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAACAGTGAGTATACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTCAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467