Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RYX39_RS08910 Genome accession   NZ_CP136430
Coordinates   1715202..1716101 (+) Length   299 a.a.
NCBI ID   WP_316961230.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1710202..1721101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS08890 (RYX39_08890) - 1710871..1712601 (+) 1731 WP_316961229.1 hypothetical protein -
  RYX39_RS08895 (RYX39_08895) - 1712598..1712879 (+) 282 WP_095713833.1 FlhB-like flagellar biosynthesis protein -
  RYX39_RS08900 (RYX39_08900) sucC 1713053..1714210 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  RYX39_RS08905 (RYX39_08905) sucD 1714239..1715141 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  RYX39_RS08910 (RYX39_08910) dprA 1715202..1716101 (+) 900 WP_316961230.1 DNA-processing protein DprA Machinery gene
  RYX39_RS08915 (RYX39_08915) topA 1716292..1718367 (+) 2076 WP_044155905.1 type I DNA topoisomerase -
  RYX39_RS08920 (RYX39_08920) trmFO 1718443..1719750 (+) 1308 WP_101861212.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RYX39_RS08925 (RYX39_08925) xerC 1719818..1720732 (+) 915 WP_316961231.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33089.27 Da        Isoelectric Point: 9.6040

>NTDB_id=891025 RYX39_RS08910 WP_316961230.1 1715202..1716101(+) (dprA) [Bacillus halotolerans strain Q2H2]
MDQAAACLITCRINQLLSPSLLLKWWKADPSMSLSNPSYALETASRGKVKAAALKNKIEEQYSKLQHLLSVYYQQGINVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIRVVNHLTRELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=891025 RYX39_RS08910 WP_316961230.1 1715202..1716101(+) (dprA) [Bacillus halotolerans strain Q2H2]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGTCAAATCCTTCATATGCATTAGAAACAGCTTCACGCGGCAAAGTAAAGGCTGCGGCAC
TAAAAAATAAAATAGAAGAACAATATTCAAAACTTCAGCATTTACTCTCTGTATATTATCAGCAAGGCATTAATGTCATT
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACACCCGACAGCCTATGGAATCCGGGTTGTCAATC
ATCTTACAAGAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCAAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCGGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.612

100

0.836