Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BPO_RS09125 Genome accession   NZ_CP136426
Coordinates   1817326..1817979 (-) Length   217 a.a.
NCBI ID   WP_327984051.1    Uniprot ID   -
Organism   Bergeyella porcorum strain QD2021     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1812326..1822979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPO_RS09110 (BPO_2042) - 1812941..1814842 (+) 1902 WP_327984048.1 ATP-dependent DNA helicase RecQ -
  BPO_RS09115 (BPO_2043) der 1815146..1816456 (+) 1311 WP_327984049.1 ribosome biogenesis GTPase Der -
  BPO_RS09120 (BPO_2044) upp 1816671..1817321 (+) 651 WP_327984050.1 uracil phosphoribosyltransferase -
  BPO_RS09125 (BPO_2045) comF 1817326..1817979 (-) 654 WP_327984051.1 ComF family protein Machinery gene
  BPO_RS09130 (BPO_2047) queD 1818360..1818803 (+) 444 WP_327984052.1 6-carboxytetrahydropterin synthase QueD -
  BPO_RS09135 (BPO_2048) - 1818832..1819599 (+) 768 WP_327984053.1 UDP-2,3-diacylglucosamine diphosphatase -
  BPO_RS09140 (BPO_2049) - 1819606..1820613 (+) 1008 WP_327984054.1 acyl transferase -
  BPO_RS09145 (BPO_2050) - 1820672..1821445 (-) 774 WP_327984055.1 TPM domain-containing protein -
  BPO_RS09150 (BPO_2051) - 1821426..1821854 (-) 429 WP_327984056.1 TPM domain-containing protein -
  BPO_RS09155 (BPO_2052) - 1821864..1822472 (-) 609 WP_327984057.1 LemA family protein -
  BPO_RS09160 (BPO_2054) - 1822496..1822726 (-) 231 Protein_1751 LemA family protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25244.14 Da        Isoelectric Point: 8.2679

>NTDB_id=890976 BPO_RS09125 WP_327984051.1 1817326..1817979(-) (comF) [Bergeyella porcorum strain QD2021]
MLLDLILPNRCLHCNLIIAGDDVVCEACRQHINFTHWDFNGNHLLKQKCQLLFPTENAFALMVFEKEGLSRNIIHNLKYK
GRENIANHIAQWTIEQLEFQNSKPELLVSVPLHPKKQKERGYNQLHRYTELLSAHYNIPYHHTLLKRNQYKKAQALKNKI
QRSQTEQLFSLTEPIQNTHCLLIDDVFTTGNTLNAAAWELLKDPSNRISILVMAVDL

Nucleotide


Download         Length: 654 bp        

>NTDB_id=890976 BPO_RS09125 WP_327984051.1 1817326..1817979(-) (comF) [Bergeyella porcorum strain QD2021]
ATGCTATTAGACCTGATTTTGCCCAATCGATGCCTACACTGCAATCTCATCATTGCTGGTGATGATGTGGTGTGCGAAGC
GTGTAGGCAACATATCAACTTCACCCATTGGGATTTTAACGGCAATCATCTTCTGAAACAAAAATGTCAATTGCTCTTCC
CAACAGAGAACGCGTTTGCCTTAATGGTTTTTGAAAAAGAAGGTCTCAGCAGAAACATCATTCACAATCTAAAATACAAG
GGTAGAGAAAACATTGCCAACCATATCGCCCAATGGACAATAGAACAATTGGAATTTCAAAACTCAAAACCTGAACTATT
GGTAAGTGTCCCTTTGCACCCTAAAAAACAAAAAGAACGAGGCTACAACCAGCTGCATCGCTATACAGAGTTGCTATCTG
CACATTATAACATCCCGTACCACCATACCCTGCTAAAACGAAACCAATACAAAAAAGCCCAAGCCCTCAAAAATAAAATC
CAACGCTCCCAGACAGAGCAACTTTTTTCCCTTACAGAGCCTATACAAAATACCCATTGCCTACTCATAGACGATGTGTT
CACCACGGGCAATACTCTAAATGCTGCTGCTTGGGAACTTCTAAAAGACCCTAGCAACCGCATCAGTATCTTGGTAATGG
CAGTAGATTTATAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

52.778

99.539

0.525