Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BLCOC_RS19800 Genome accession   NZ_CP136422
Coordinates   4394341..4396185 (-) Length   614 a.a.
NCBI ID   WP_018598360.1    Uniprot ID   -
Organism   Blautia coccoides strain DSM 935     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4389341..4401185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLCOC_RS19785 (BLCOC_39640) - 4390156..4390509 (+) 354 WP_018598356.1 ArsR/SmtB family transcription factor -
  BLCOC_RS19790 (BLCOC_39650) - 4390580..4392787 (-) 2208 WP_018598357.1 DNA topoisomerase III -
  BLCOC_RS19795 (BLCOC_39660) aroF 4392792..4393802 (-) 1011 WP_018598358.1 3-deoxy-7-phosphoheptulonate synthase -
  BLCOC_RS19800 (BLCOC_39680) rcrQ 4394341..4396185 (-) 1845 WP_018598360.1 ABC transporter ATP-binding protein Regulator
  BLCOC_RS19805 (BLCOC_39690) - 4396178..4398343 (-) 2166 WP_018598361.1 ABC transporter ATP-binding protein -
  BLCOC_RS19810 (BLCOC_39700) - 4398362..4398796 (-) 435 WP_018598362.1 MarR family winged helix-turn-helix transcriptional regulator -
  BLCOC_RS19815 (BLCOC_39710) - 4399046..4400434 (-) 1389 WP_018598363.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68601.48 Da        Isoelectric Point: 7.0121

>NTDB_id=890924 BLCOC_RS19800 WP_018598360.1 4394341..4396185(-) (rcrQ) [Blautia coccoides strain DSM 935]
MSDTARRPRGPMGGHGKGMPGEKAKDFKGAMMRLVKYMERYKFRLILMVLFAVGGTVFNIVGPKILGKATTELFNGLVSK
INGGSGINFDKIVQILLACLCLYLVSALLSFIQGFIMTGISNDVTYSLRKDISQKINRIPMKYFESRTHGEILSRITNDV
DTLQMGINQSVTQLITSCTTLIGVLVMMLSINVWMTLAALLILPISMAIISKVMKHSQKYFQAQQKYLGEVNGQVEEIYS
GHNVVKAFNKEESVISEFEKTNEKLYSSAWRSQFFSGMMMPIMQFVGNLGYVMVALLGGFMVIKSKIEVGDVQAFFQYIR
NFTQPIQQIAQVTNMLQSSAAASERVFEFLDVEEEEQTVENPADVSHVDGNVEIRHTSFGYDPNKIIIHDFSADIKAGQK
VAIVGPTGAGKTTMIKLLMRFYDVNSGEILIDGHNIKDFNRSELRELFGMVLQDTWLFHGTIMENIRYGRLDATDEEVIA
AAKAAHAHHFIMSQPGGYQMVLNEETNNISQGQKQLLTIARAILADNRLLILDEATSSVDTRTEERIQKAMDNLMKGRTS
FVIAHRLSTIRDADLILVMKDGDIIEQGTHKALLEAGGFYANLYNSQFEKAEAM

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=890924 BLCOC_RS19800 WP_018598360.1 4394341..4396185(-) (rcrQ) [Blautia coccoides strain DSM 935]
ATGAGTGATACAGCGAGAAGACCGAGAGGGCCGATGGGTGGTCACGGAAAAGGAATGCCGGGCGAGAAGGCAAAAGATTT
TAAGGGTGCCATGATGCGTCTGGTGAAATATATGGAGCGGTATAAGTTCAGGCTGATACTGATGGTCCTGTTTGCCGTAG
GCGGTACGGTATTTAATATTGTGGGGCCTAAGATTTTAGGTAAGGCTACCACTGAACTGTTTAACGGACTGGTATCCAAG
ATAAACGGCGGCAGCGGAATCAATTTTGACAAGATTGTTCAGATCCTTTTGGCATGTCTCTGTCTGTACCTGGTCAGCGC
CCTGCTGTCCTTTATCCAGGGATTTATTATGACAGGGATATCAAATGATGTCACATACAGCCTGAGAAAAGACATCTCCC
AGAAGATCAACAGAATTCCCATGAAATATTTTGAGAGCAGGACCCACGGTGAGATTCTCTCAAGGATCACCAATGATGTG
GATACCCTGCAGATGGGTATCAACCAGAGTGTAACCCAGCTCATCACGTCCTGCACCACGCTCATAGGCGTGCTTGTGAT
GATGCTGAGTATCAATGTATGGATGACACTGGCGGCACTGCTGATCCTTCCTATCTCAATGGCGATCATCAGCAAGGTCA
TGAAGCATTCACAAAAATATTTCCAGGCACAGCAGAAGTATCTGGGTGAAGTAAACGGACAGGTGGAGGAGATTTATAGC
GGACATAATGTTGTAAAGGCATTTAACAAGGAAGAGTCCGTGATCAGCGAATTTGAGAAGACCAATGAAAAGCTGTACAG
CTCTGCATGGCGCTCTCAGTTTTTCTCCGGTATGATGATGCCTATCATGCAGTTTGTGGGTAACCTGGGATATGTGATGG
TTGCTCTGTTGGGCGGATTCATGGTGATCAAGAGCAAGATCGAAGTAGGTGATGTGCAGGCGTTTTTCCAGTATATCAGA
AACTTCACACAGCCTATCCAACAGATCGCCCAGGTGACAAATATGCTGCAGTCCTCGGCAGCGGCATCTGAGAGAGTGTT
TGAATTCCTGGATGTTGAGGAGGAAGAGCAGACAGTGGAAAACCCGGCAGATGTCAGCCATGTTGACGGCAATGTAGAAA
TCCGCCACACATCATTTGGATATGACCCCAATAAGATCATTATCCATGACTTCTCCGCAGATATAAAAGCAGGGCAGAAG
GTGGCTATTGTGGGTCCCACAGGTGCCGGCAAGACAACCATGATCAAACTGCTGATGCGGTTCTATGATGTCAATTCCGG
AGAGATCCTGATCGATGGTCATAACATCAAGGACTTTAACAGAAGTGAGCTGCGTGAGCTGTTTGGTATGGTCTTGCAGG
ATACCTGGCTGTTCCACGGAACAATTATGGAAAATATCCGCTATGGCCGTCTGGATGCCACAGATGAAGAGGTCATTGCA
GCGGCAAAGGCAGCACATGCCCATCACTTTATCATGTCACAGCCCGGTGGTTATCAGATGGTGCTGAACGAAGAGACAAA
CAATATCTCCCAGGGACAGAAACAGCTTCTGACCATTGCCAGAGCAATTCTGGCGGATAACAGGCTGCTGATCCTGGATG
AAGCTACTTCCTCTGTGGATACAAGAACAGAAGAGCGTATCCAAAAGGCCATGGATAATCTGATGAAGGGTAGAACCAGT
TTTGTGATCGCCCACAGGCTGTCCACTATCCGGGATGCGGATCTGATCCTTGTTATGAAAGACGGAGATATTATTGAACA
GGGAACTCATAAAGCCTTGCTGGAAGCCGGCGGATTTTATGCAAACCTGTATAACAGCCAGTTTGAGAAGGCAGAGGCCA
TGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(389-537)

ABC transporter transmembrane region (ABC_membrane)

(45-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.195

95.44

0.489