Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCU74_RS15110 Genome accession   NZ_AP024883
Coordinates   3392386..3393087 (+) Length   233 a.a.
NCBI ID   WP_087482813.1    Uniprot ID   -
Organism   Vibrio mangrovi strain CECT 7927     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3387386..3398087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU74_RS15090 greB 3387913..3388392 (+) 480 WP_087482817.1 transcription elongation factor GreB -
  OCU74_RS15095 - 3388491..3390809 (+) 2319 WP_087482816.1 Tex family protein -
  OCU74_RS15100 - 3390905..3391381 (-) 477 WP_200807792.1 ATP-dependent Lon protease -
  OCU74_RS15105 bioH 3391535..3392299 (-) 765 WP_200807795.1 pimeloyl-ACP methyl ester esterase BioH -
  OCU74_RS15110 comF 3392386..3393087 (+) 702 WP_087482813.1 phosphoribosyltransferase family protein Machinery gene
  OCU74_RS15115 nfuA 3393171..3393758 (+) 588 WP_087482812.1 Fe-S biogenesis protein NfuA -
  OCU74_RS15120 nudE 3393921..3394499 (+) 579 WP_087482811.1 ADP compounds hydrolase NudE -
  OCU74_RS15125 cysQ 3394496..3395317 (+) 822 WP_087482810.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCU74_RS15130 - 3395329..3396093 (-) 765 WP_143693314.1 type II secretion system protein N -
  OCU74_RS15135 - 3396098..3396589 (-) 492 WP_143693312.1 type II secretion system protein M -
  OCU74_RS15140 gspL 3396599..3397810 (-) 1212 WP_159457477.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26613.03 Da        Isoelectric Point: 8.5460

>NTDB_id=89090 OCU74_RS15110 WP_087482813.1 3392386..3393087(+) (comF) [Vibrio mangrovi strain CECT 7927]
MLYQRIKQTLFSSVPRLCALCGLPLASGEYDWCGTCLSYFQPTPRCTRCGLQMPFSTPQCGRCLKSPPLWNHLYCLGDYA
YPLTQMIHQIKYGRQFWHIDSLAALLAKSIPSPAPLLLPVPMHWQRYLHRGFNQSTLLTHSLSRHLGVACQTRLLQRIRS
TPPQEGLHKTERENNLMQAFTLRSLPPVRHVAIVDDVVTTGSTVSQLCQLLLEVGVEYIDIYCLCRTPEYHNQ

Nucleotide


Download         Length: 702 bp        

>NTDB_id=89090 OCU74_RS15110 WP_087482813.1 3392386..3393087(+) (comF) [Vibrio mangrovi strain CECT 7927]
ATGTTATATCAACGAATCAAACAAACTCTTTTTAGCAGCGTTCCCCGACTATGTGCGTTATGTGGACTTCCTCTAGCATC
CGGAGAATATGACTGGTGCGGCACCTGTCTGTCATACTTTCAACCGACACCCCGTTGCACACGATGCGGTCTGCAGATGC
CATTTTCAACACCGCAGTGCGGGCGCTGTCTCAAATCCCCACCACTCTGGAACCACCTCTATTGCCTTGGTGATTATGCC
TATCCTCTGACTCAAATGATCCATCAGATTAAATACGGGCGTCAGTTTTGGCATATTGATTCCCTTGCTGCTCTTCTGGC
TAAATCTATTCCTTCTCCGGCACCGTTGCTCCTCCCTGTACCAATGCACTGGCAACGCTATCTGCATCGGGGATTCAACC
AAAGCACCTTACTCACACACAGTCTTAGCCGACATCTGGGTGTCGCCTGTCAAACCAGACTACTACAACGTATCCGCTCA
ACACCACCACAGGAAGGACTACATAAAACTGAAAGAGAAAATAACCTGATGCAAGCATTTACTTTACGCAGTTTACCACC
AGTCAGGCATGTCGCTATTGTTGATGATGTGGTAACGACCGGCAGTACCGTCAGTCAGTTATGCCAATTATTACTTGAAG
TTGGAGTCGAATACATTGATATTTATTGCTTATGCAGGACTCCTGAATATCACAATCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

49.565

98.712

0.489
  comF Vibrio campbellii strain DS40M4

47.863

100

0.481

Multiple sequence alignment