Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCU45_RS14505 Genome accession   NZ_AP024873
Coordinates   3260678..3261379 (+) Length   233 a.a.
NCBI ID   WP_072962337.1    Uniprot ID   A0A1M5FRT6
Organism   Vibrio gazogenes strain ATCC 29988     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3255678..3266379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU45_RS14485 greB 3256282..3256761 (+) 480 WP_072962346.1 transcription elongation factor GreB -
  OCU45_RS14490 - 3256786..3259095 (+) 2310 WP_072962343.1 Tex family protein -
  OCU45_RS14495 - 3259196..3259672 (-) 477 WP_072962442.1 ATP-dependent Lon protease -
  OCU45_RS14500 bioH 3259823..3260587 (-) 765 WP_072962340.1 pimeloyl-ACP methyl ester esterase BioH -
  OCU45_RS14505 comF 3260678..3261379 (+) 702 WP_072962337.1 phosphoribosyltransferase family protein Machinery gene
  OCU45_RS14510 nfuA 3261463..3262050 (+) 588 WP_021021692.1 Fe-S biogenesis protein NfuA -
  OCU45_RS14515 nudE 3262214..3262792 (+) 579 WP_072962334.1 ADP compounds hydrolase NudE -
  OCU45_RS14520 cysQ 3262789..3263610 (+) 822 WP_072962331.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCU45_RS14525 - 3263677..3264447 (-) 771 WP_131814939.1 type II secretion system protein N -
  OCU45_RS14530 - 3264453..3264944 (-) 492 WP_072962439.1 type II secretion system protein M -
  OCU45_RS14535 gspL 3264954..3266165 (-) 1212 WP_072962327.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26850.22 Da        Isoelectric Point: 8.6154

>NTDB_id=88999 OCU45_RS14505 WP_072962337.1 3260678..3261379(+) (comF) [Vibrio gazogenes strain ATCC 29988]
MLLQRIQHSFRHHIPRLCALCELPLTNQEHHWCASCLTYFQSTPRCTRCGLSMPFPTGRCGTCLQSPPLWNALYCLGDYA
YPLAPMIHQIKYGRQFWHIPPLAALLAQVIPSPAPLLLPVPLHWRRYLYRGFNQSDLLAHHLSQALAVSYQTKLLQRTRS
TPPQEGLHKNEREQNLRKAFMLRNRPSTNHIAIVDDVVTTGSTISQLCQLLLEVGVEYIDIYCLCRTPEYHNQ

Nucleotide


Download         Length: 702 bp        

>NTDB_id=88999 OCU45_RS14505 WP_072962337.1 3260678..3261379(+) (comF) [Vibrio gazogenes strain ATCC 29988]
ATGTTATTGCAACGCATTCAACACTCTTTCCGTCACCATATTCCCCGATTATGCGCGCTCTGTGAGCTGCCGTTAACCAA
TCAGGAACACCACTGGTGTGCCAGTTGCCTGACCTATTTTCAATCAACCCCCCGTTGTACACGATGCGGCTTATCGATGC
CATTCCCAACCGGCCGATGCGGAACTTGCCTTCAGTCACCGCCACTGTGGAACGCCCTCTATTGCCTTGGTGATTATGCC
TATCCGCTGGCCCCCATGATTCACCAAATCAAATACGGACGCCAGTTCTGGCACATACCGCCTCTTGCCGCACTTTTGGC
GCAGGTCATCCCTTCTCCTGCGCCACTGTTACTTCCGGTTCCCCTACACTGGCGACGATATCTTTATCGCGGGTTCAATC
AGAGTGATTTACTGGCGCACCATCTCAGTCAGGCGCTGGCAGTCTCCTATCAAACCAAACTGCTGCAACGGACTCGTTCA
ACACCACCGCAAGAAGGTCTGCATAAAAATGAAAGAGAACAGAATCTGAGAAAAGCGTTTATGTTACGCAACCGCCCCTC
GACCAATCATATTGCGATCGTTGATGATGTCGTGACAACAGGCAGTACCATCAGTCAATTATGCCAATTATTGCTTGAAG
TCGGTGTCGAATACATTGATATTTATTGCTTATGCAGAACTCCTGAATATCACAACCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5FRT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.338

91.416

0.515
  comF Vibrio campbellii strain DS40M4

46.186

100

0.468

Multiple sequence alignment