Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RX793_RS01365 Genome accession   NZ_CP136263
Coordinates   390702..391481 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain 0039     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 385702..396481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS01335 (RX793_01335) fliH 385746..386501 (-) 756 WP_003154255.1 flagellar assembly protein FliH -
  RX793_RS01340 (RX793_01340) fliG 386494..387510 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  RX793_RS01345 (RX793_01345) fliF 387523..389133 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  RX793_RS01350 (RX793_01350) fliE 389176..389496 (-) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  RX793_RS01355 (RX793_01355) flgC 389507..389959 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  RX793_RS01360 (RX793_01360) flgB 389959..390348 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  RX793_RS01365 (RX793_01365) codY 390702..391481 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RX793_RS01370 (RX793_01370) hslU 391519..392922 (-) 1404 WP_024085299.1 HslU--HslV peptidase ATPase subunit -
  RX793_RS01375 (RX793_01375) hslV 392939..393484 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  RX793_RS01380 (RX793_01380) xerC 393500..394417 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  RX793_RS01385 (RX793_01385) trmFO 394487..395794 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=889949 RX793_RS01365 WP_003154263.1 390702..391481(-) (codY) [Bacillus velezensis strain 0039]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=889949 RX793_RS01365 WP_003154263.1 390702..391481(-) (codY) [Bacillus velezensis strain 0039]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAAATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471