Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RVY71_RS21260 Genome accession   NZ_CP136188
Coordinates   963358..963666 (+) Length   102 a.a.
NCBI ID   WP_331669526.1    Uniprot ID   -
Organism   Emergencia timonensis strain NTUH-41-K21     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 958358..968666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY71_RS04580 (RVY71_04580) - 959658..960032 (+) 375 WP_317870153.1 response regulator -
  RVY71_RS04585 (RVY71_04585) - 960121..960327 (-) 207 WP_067535810.1 helix-turn-helix transcriptional regulator -
  RVY71_RS04590 (RVY71_04590) - 960332..960640 (-) 309 WP_067535813.1 DUF6442 family protein -
  RVY71_RS04595 (RVY71_04595) - 960880..961368 (+) 489 WP_067535816.1 MarR family winged helix-turn-helix transcriptional regulator -
  RVY71_RS04600 (RVY71_04600) - 961352..963427 (+) 2076 WP_331669497.1 ABC transporter ATP-binding protein -
  RVY71_RS21260 rcrP 963358..963666 (+) 309 WP_331669526.1 ABC transporter ATP-binding protein Regulator
  RVY71_RS04605 (RVY71_04605) - 963668..965542 (+) 1875 WP_067535824.1 ABC transporter ATP-binding protein -
  RVY71_RS04610 (RVY71_04610) - 965941..967248 (-) 1308 WP_067535827.1 DUF4179 domain-containing protein -
  RVY71_RS04615 (RVY71_04615) - 967245..967715 (-) 471 WP_067535829.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11162.79 Da        Isoelectric Point: 4.5716

>NTDB_id=889712 RVY71_RS21260 WP_331669526.1 963358..963666(+) (rcrP) [Emergencia timonensis strain NTUH-41-K21]
MGRAIAKEPKLFVFDDSFSALDMKTDAKLRKALETKVSDCTEVIVAQRISTILHADQILVLDDGEIVGKGTHEELLANCE
VYQQIAKSQLSAKELGIEEGVS

Nucleotide


Download         Length: 309 bp        

>NTDB_id=889712 RVY71_RS21260 WP_331669526.1 963358..963666(+) (rcrP) [Emergencia timonensis strain NTUH-41-K21]
ATCGGCAGAGCCATTGCAAAAGAACCAAAGCTTTTTGTCTTTGACGACAGCTTTTCAGCTCTGGACATGAAGACGGACGC
CAAATTGAGAAAAGCGTTGGAAACAAAAGTATCAGACTGTACTGAAGTCATCGTCGCACAGAGAATCAGTACGATTCTTC
ATGCGGATCAAATATTGGTATTAGATGATGGAGAGATCGTCGGCAAGGGAACCCATGAAGAGCTTCTGGCAAATTGTGAG
GTATATCAGCAGATTGCAAAATCACAGCTTTCTGCTAAGGAACTTGGGATAGAAGAGGGGGTGAGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

61.053

93.137

0.569