Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAEO47_RS16680 Genome accession   NZ_CP151543
Coordinates   3613580..3614305 (+) Length   241 a.a.
NCBI ID   WP_016252902.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HN232     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3608580..3619305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO47_RS16650 (AAEO47_16650) - 3608700..3609578 (-) 879 WP_058133180.1 allophanate hydrolase subunit 1 -
  AAEO47_RS16655 (AAEO47_16655) - 3609580..3610956 (-) 1377 WP_003103320.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  AAEO47_RS16660 (AAEO47_16660) - 3610967..3611215 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  AAEO47_RS16665 (AAEO47_16665) - 3611292..3612050 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  AAEO47_RS16670 (AAEO47_16670) - 3612168..3613094 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  AAEO47_RS16675 (AAEO47_16675) - 3613148..3613441 (+) 294 WP_016252903.1 hypothetical protein -
  AAEO47_RS16680 (AAEO47_16680) comF 3613580..3614305 (+) 726 WP_016252902.1 ComF family protein Machinery gene
  AAEO47_RS16685 (AAEO47_16685) - 3614347..3614667 (+) 321 WP_003103307.1 YfiM family lipoprotein -
  AAEO47_RS16690 (AAEO47_16690) - 3614735..3615493 (+) 759 WP_016252901.1 TOBE domain-containing protein -
  AAEO47_RS16695 (AAEO47_16695) - 3615555..3616529 (+) 975 WP_003084794.1 serine/threonine protein kinase -
  AAEO47_RS16700 (AAEO47_16700) rarD 3616735..3617631 (+) 897 WP_003103301.1 EamA family transporter RarD -
  AAEO47_RS16705 (AAEO47_16705) - 3618321..3618836 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27099.58 Da        Isoelectric Point: 11.0325

>NTDB_id=889000 AAEO47_RS16680 WP_016252902.1 3613580..3614305(+) (comF) [Pseudomonas aeruginosa strain HN232]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLHCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=889000 AAEO47_RS16680 WP_016252902.1 3613580..3614305(+) (comF) [Pseudomonas aeruginosa strain HN232]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCACTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCA
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(138-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382