Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV29_RS00995 Genome accession   NZ_AP024861
Coordinates   218984..219688 (-) Length   234 a.a.
NCBI ID   WP_084193310.1    Uniprot ID   A0A1M5YUM3
Organism   Vibrio aerogenes strain LMG 19650     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 213984..224688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV29_RS00965 gspL 214180..215424 (+) 1245 WP_073603707.1 type II secretion system protein GspL -
  OCV29_RS00970 - 215435..215926 (+) 492 WP_073603708.1 type II secretion system protein M -
  OCV29_RS00975 - 215931..216698 (+) 768 WP_139281576.1 type II secretion system protein N -
  OCV29_RS00980 cysQ 216782..217612 (-) 831 WP_073603710.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV29_RS00985 nudE 217615..218175 (-) 561 WP_073603711.1 ADP compounds hydrolase NudE -
  OCV29_RS00990 nfuA 218275..218859 (-) 585 WP_073603712.1 Fe-S biogenesis protein NfuA -
  OCV29_RS00995 comF 218984..219688 (-) 705 WP_084193310.1 ComF family protein Machinery gene
  OCV29_RS01000 bioH 219781..220548 (+) 768 WP_073603713.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV29_RS01005 - 220696..221172 (+) 477 WP_073603714.1 ATP-dependent Lon protease -
  OCV29_RS01010 - 221245..223563 (-) 2319 WP_073603715.1 Tex family protein -
  OCV29_RS01015 greB 223804..224283 (+) 480 WP_073603738.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 27226.64 Da        Isoelectric Point: 8.9773

>NTDB_id=88861 OCV29_RS00995 WP_084193310.1 218984..219688(-) (comF) [Vibrio aerogenes strain LMG 19650]
MRYQRFKNTICKMIPRQCPLCELELYAAEGHWCTHCMRWFESSPRCQRCGEPTLEPVSICGQCLSHPPLWNKLYCLGDYS
FPLNIYISKIKYQRQFWHVFPLCQLLARQITEPAEQLISVPMHWQRYLIRGFNQSDLIASRLSRLLNTSYSSGIVKKNHA
TRPQQKLSRQARLRNLNSAFELKCHTDKAHVAIVDDVVTTGTTVSQLCHLLQQSGVRKIDIYCLCKTPENHLSN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=88861 OCV29_RS00995 WP_084193310.1 218984..219688(-) (comF) [Vibrio aerogenes strain LMG 19650]
ATGCGCTATCAAAGATTCAAAAATACCATTTGCAAGATGATTCCACGCCAGTGTCCATTATGCGAGCTGGAACTTTATGC
GGCCGAAGGCCACTGGTGCACTCACTGCATGCGTTGGTTTGAATCCAGCCCCCGGTGCCAGCGGTGTGGAGAACCAACAC
TGGAGCCTGTCAGTATCTGCGGGCAGTGCCTGAGTCATCCGCCTCTCTGGAACAAACTCTACTGCCTTGGGGATTACAGT
TTTCCGCTTAATATTTATATCAGCAAAATCAAATATCAACGTCAGTTCTGGCATGTATTTCCCCTGTGCCAGCTGTTGGC
ACGCCAGATTACGGAACCAGCAGAACAGTTAATTTCAGTCCCCATGCACTGGCAACGTTATCTTATCAGGGGATTTAATC
AGAGTGACCTGATCGCTTCACGGCTCAGCCGCTTACTCAACACCTCTTATAGTTCTGGCATAGTGAAGAAAAATCATGCT
ACCCGGCCACAGCAGAAACTAAGCAGACAAGCCAGATTACGGAATCTGAACTCTGCATTTGAACTGAAATGCCACACAGA
TAAAGCACATGTAGCAATTGTCGACGATGTTGTCACTACAGGTACAACAGTCAGTCAACTATGCCATTTATTACAACAAT
CCGGAGTCAGAAAAATTGATATTTACTGCCTGTGCAAAACCCCGGAAAATCATTTATCCAATTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(156-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

50.222

96.154

0.483
  comF Vibrio campbellii strain DS40M4

41.949

100

0.423

Multiple sequence alignment