Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AABJ76_RS01970 Genome accession   NZ_AP027673
Coordinates   416444..416911 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain PSS-07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411444..421911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ76_RS01945 (VEE16_03820) rpsG 411585..412055 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  AABJ76_RS01950 (VEE16_03830) fusA 412152..414266 (+) 2115 WP_000124700.1 elongation factor G -
  AABJ76_RS01955 (VEE16_03840) tuf 414337..415521 (+) 1185 WP_000031783.1 elongation factor Tu -
  AABJ76_RS01960 (VEE16_03850) bfd 415704..415898 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  AABJ76_RS01965 (VEE16_03860) bfr 415971..416447 (+) 477 WP_000675515.1 bacterioferritin -
  AABJ76_RS01970 (VEE16_03870) pilD 416444..416911 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  AABJ76_RS01975 (VEE16_03880) rpsJ 417290..417601 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  AABJ76_RS01980 (VEE16_03890) rplC 417634..418263 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  AABJ76_RS01985 (VEE16_03900) rplD 418274..418879 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  AABJ76_RS01990 (VEE16_03910) rplW 418876..419178 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  AABJ76_RS01995 (VEE16_03920) rplB 419196..420017 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  AABJ76_RS02000 (VEE16_03930) rpsS 420034..420312 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  AABJ76_RS02005 (VEE16_03940) rplV 420327..420659 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  AABJ76_RS02010 (VEE16_03950) rpsC 420677..421378 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  AABJ76_RS02015 (VEE16_03960) rplP 421391..421801 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=88843 AABJ76_RS01970 WP_000339836.1 416444..416911(-) (pilD) [Escherichia coli strain PSS-07]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=88843 AABJ76_RS01970 WP_000339836.1 416444..416911(-) (pilD) [Escherichia coli strain PSS-07]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment