Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RUI02_RS08740 Genome accession   NZ_CP136099
Coordinates   1663596..1664375 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. TSA-4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658596..1669375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUI02_RS08720 (RUI02_08720) trmFO 1659289..1660596 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RUI02_RS08725 (RUI02_08725) xerC 1660664..1661578 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  RUI02_RS08730 (RUI02_08730) clpQ 1661591..1662136 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  RUI02_RS08735 (RUI02_08735) hslU 1662153..1663556 (+) 1404 WP_046381023.1 HslU--HslV peptidase ATPase subunit -
  RUI02_RS08740 (RUI02_08740) codY 1663596..1664375 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RUI02_RS08745 (RUI02_08745) flgB 1664755..1665144 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  RUI02_RS08750 (RUI02_08750) flgC 1665144..1665596 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  RUI02_RS08755 (RUI02_08755) fliE 1665607..1665927 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  RUI02_RS08760 (RUI02_08760) fliF 1665973..1667583 (+) 1611 WP_046381024.1 flagellar basal-body MS-ring/collar protein FliF -
  RUI02_RS08765 (RUI02_08765) fliG 1667596..1668612 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  RUI02_RS08770 (RUI02_08770) fliH 1668605..1669357 (+) 753 WP_038430009.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=888406 RUI02_RS08740 WP_003220850.1 1663596..1664375(+) (codY) [Bacillus sp. TSA-4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=888406 RUI02_RS08740 WP_003220850.1 1663596..1664375(+) (codY) [Bacillus sp. TSA-4]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467