Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RU414_RS23925 Genome accession   NZ_CP136047
Coordinates   4928665..4930185 (+) Length   506 a.a.
NCBI ID   WP_054528914.1    Uniprot ID   -
Organism   Citrobacter freundii strain CPO20180081     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4923665..4935185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RU414_RS23905 (RU414_23905) - 4925221..4926150 (-) 930 WP_003018014.1 branched-chain amino acid transaminase -
  RU414_RS23910 (RU414_23910) ilvM 4926168..4926431 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  RU414_RS23915 (RU414_23915) ilvG 4926428..4928074 (-) 1647 WP_003841174.1 acetolactate synthase 2 catalytic subunit -
  RU414_RS23920 (RU414_23920) ilvL 4928214..4928312 (-) 99 WP_001311244.1 ilv operon leader peptide -
  RU414_RS23925 (RU414_23925) comM 4928665..4930185 (+) 1521 WP_054528914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RU414_RS23930 (RU414_23930) maoP 4930210..4930548 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  RU414_RS23935 (RU414_23935) hdfR 4930655..4931500 (+) 846 WP_086529734.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55094.03 Da        Isoelectric Point: 7.2664

>NTDB_id=888348 RU414_RS23925 WP_054528914.1 4928665..4930185(+) (comM) [Citrobacter freundii strain CPO20180081]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAVINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIQGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFIPCALADDLSDVIGQEQGKRGLELTAAGGHNLILIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQNQVKG
EDSATVKQRVMAARDRQYRRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=888348 RU414_RS23925 WP_054528914.1 4928665..4930185(+) (comM) [Citrobacter freundii strain CPO20180081]
ATGTCACTATCGATTGTTCACACACGCGCTGCGTTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCCCGCGATCGGGTTCGCAGTGCGGTAA
TTAATAGCGGTTATGAATTCCCGGCAAAAAAGATAACCATAAACCTCGCGCCAGCCGATCTCCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACTACCCATAATCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGTGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACCGAAGCCATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTTGGACTAATACAGGGTGAAGGGTGCCTCATAGCCGATCATCTA
CAGGCAGTATGCGCATTCCTCGAAGGTAAGCATGATTTAGACAGACCATCATCAGCAGATTTTATCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCA
TACTCATCGGCCCTCCGGGTACGGGTAAGACTATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGTAACGAT
GAGGCACTGGAAAGCGCCGCGATTCTTAGTCTGGTCAATTCCGACACGCTACAGAAACAGTGGAAACAACGCCCTTTTCG
CTCTCCGCATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACACTGGATGCACTGCGCGAACCCATTGAGTCC
GGACAGATACATCTATCCCGCACCAGAGCAAAAATCACCTATCCCGCTCGCTTTCAACTCATAGCCGCCATGAATCCCAG
CCCAACAGGCCATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTCTCTCTCGAAATCCCTTTGCCACCGCCCGGGATACTCAGCCAGAACCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGATCGTCAGTATCGACGACAAAATAAGTTAAACGCGCA
TCTGGACAGTCAGGATATCCATAAATACTGTCCACTGCGCAGCGACGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCTATCCGCGCCTGGTTACGCCTGATAAAGGTTGCTCGAACGATCGCGGATATAGAACAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAAAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Glaesserella parasuis strain SC1401

57.677

100

0.579
  comM Vibrio cholerae strain A1552

58.167

99.209

0.577
  comM Haemophilus influenzae Rd KW20

56.751

100

0.573
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.52

100

0.427