Detailed information NTG0888043

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: RS399_RS18350
• Genome accession: NZ_CP135973
• Coordinates: 3658771..3661167 (+)
• Length: 798 a.a.
• NCBI ID: WP_084994735.1
• Uniprot ID: -
• Organism: Bacillus inaquosorum strain SI3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3653771..3666167

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RS399_RS18325 (RS399_18325)	-	3653853..3655118 (-)	1266	WP_084994745.1	replication-associated recombination protein A	-
RS399_RS18330 (RS399_18330)	cymR	3655320..3655736 (+)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
RS399_RS18335 (RS399_18335)	-	3655755..3656897 (+)	1143	WP_084994742.1	cysteine desulfurase family protein	-
RS399_RS18340 (RS399_18340)	mnmA	3656925..3658040 (+)	1116	WP_003237485.1	tRNA 2-thiouridine(34) synthase MnmA	-
RS399_RS18345 (RS399_18345)	-	3658126..3658746 (+)	621	WP_250620734.1	tetratricopeptide repeat protein	-
RS399_RS18350 (RS399_18350)	recD2	3658771..3661167 (+)	2397	WP_084994735.1	ATP-dependent RecD-like DNA helicase	Machinery gene
RS399_RS18355 (RS399_18355)	-	3661224..3661748 (+)	525	WP_080429038.1	PRC-barrel domain-containing protein	-
RS399_RS18360 (RS399_18360)	-	3661760..3661951 (+)	192	WP_003225893.1	hypothetical protein	-
RS399_RS18365 (RS399_18365)	-	3661973..3662104 (+)	132	WP_003225895.1	YrzQ family protein	-
RS399_RS18370 (RS399_18370)	-	3662140..3662796 (-)	657	WP_084994732.1	amino acid ABC transporter permease	-
RS399_RS18375 (RS399_18375)	-	3662813..3663463 (-)	651	WP_019259034.1	amino acid ABC transporter permease	-
RS399_RS18380 (RS399_18380)	glnH	3663524..3664345 (-)	822	WP_315957520.1	glutamine ABC transporter substrate-binding protein GlnH	-
RS399_RS18385 (RS399_18385)	-	3664367..3665095 (-)	729	WP_019259032.1	amino acid ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 798 a.a.
• Molecular weight: 89153.84 Da
• Isoelectric Point: 5.0738

>NTDB_id=888043 RS399_RS18350 WP_084994735.1 3658771..3661167(+) (recD2) [Bacillus inaquosorum strain SI3]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPKLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEKLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDNQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPVVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDEPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPREKRREIKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKIRLSLQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide

• Length: 2397 bp

>NTDB_id=888043 RS399_RS18350 WP_084994735.1 3658771..3661167(+) (recD2) [Bacillus inaquosorum strain SI3]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAAGGGACAGTCAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCTATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGCAAGATCGTAACCCATCCAAAATTCGGGCTT
CAATTTCAAGCAGAGCATTTTAAAAAGGAGATTCCGACGACTAAGGAAGGCATCATTCAATATTTATCGAGTGATTTGTT
CGAGGGAATCGGCAAAAAAACAGCCGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCTATTAATAAAATATTGGCTGACG
CTTCAGTGCTTTATGACGTTCCCAAGCTGTCAAAAAAGAAAGCTGATACGCTGGCCGGCGCCTTACAGCGTCATCAGGGA
CTGGAGCAAATCATGATTTCCCTGAATCAGTTTGGCTTCGGCCCTCAGCTGTCTATGAAAATCTACCAAGCCTATGAATC
CGAGACGCTTGAAAAGATTCAGGAAAACCCTTATCAGCTTGTGAAAGATGTAGAAGGCATCGGATTTGGGAAAGCGGATG
AGCTGGGCAGCAGAATGGGCCTTTCGGGTAATCACCCTGAGCGGGTAAAAGCCGCCATATTGTACACGCTTGAAACGACT
TGTCTGTCAGAAGGGCATACGTACATAGAAACGGAGAAGCTGATTATTGACACCCAATCTCTATTAAATCAATCAGCTCG
GGAGGGACAGCGCATCACTGAAATGGATGCCGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGCCGCTGTTATTTTCCATCGCTGTTTTACGCTGAACAAAATGTTGCTAAGCGAGTGAAACATATCGCAAGCCAAACT
GAATATGATAACCAGTTTCCCGAATCAGAATTTCTGCTCGCTTTAGGAGAACTGGAAGAACGGATGAACGTTCAGTATGC
CCCTAGCCAGAAAGAAGCGATTCAAAAAGCCCTTTCCTCACCGATGCTTCTTTTAACGGGGGGACCGGGAACAGGGAAAA
CGACGGTAATCAGAGGGATTGTCGAACTGTACGGAGAGCTTCACGGTGTGTCACTCGACCCGTCAGCGTATAAAAAGGAT
GAAGCTTTTCCGGTTGTATTGGCCGCACCGACAGGAAGAGCGGCGAAACGGATGAGTGAATCAACGGGGCTTCCGGCAGT
GACGATTCACAGGCTGCTCGGCTGGAACGGCGCTGAAGGATTTACCCATACAGAGGATGAGCCGATTGAAGGGAAGCTGT
TAATAATCGATGAAGCCAGCATGCTTGATATATGGCTGGCGAACCATTTGTTCAAGGCGATCCCTGATCATATTCAAATC
ATCATTGTCGGTGACGAAGATCAGCTGCCTTCTGTCGGTCCGGGCCAAGTGCTGAGAGACCTTTTGGCATCCCAGGTGAT
ACCGACTGTGAGACTGACAGACATCTACCGCCAGGCGGAGGGTTCATCGATTGTCGAGCTTGCCCACCAAATGAAAAATG
GGTTGCTGCCAAACAATTTGACTGCCCCAACGAAGGACCGTTCCTTTATTCGCTGCGGAGGCTCGCAAATTAAAGAGGTA
GTTGAGAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATTCAGGTTCTCGCCCCGATGTACAGAGG
AAAAGCCGGGATCAATGAACTGAATGTGATGCTGCAGGACATTTTGAATCCTCCTAGAGAAAAACGGAGGGAAATAAAGT
TCGGGGATGTTGTCTACAGAACCGGGGATAAAATTTTGCAGCTCGTCAATCAGCCGGAAAACAATGTGTTCAACGGAGAC
ATTGGCGAAATTACATCGATATTTTATGCGAAGGAAAATACAGAAAAAGAAGATATGGCCGTCGTTTCTTTTGACGGCAA
TGAAATGACGTTTACGAAAAAAGATTTTAACCAGTTTACCCATGCGTATTGCTGCTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTATTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCTATTACA
AGAGCAAAGAAATTTCTCATTTTATGCGGAGAAGAGGAGGCGCTGGAGTGGGGCGTGAAAAATAACGACGCAACTGTCAG
ACAGACTTCATTGAAAATCAGGCTGTCATTACAGGTTGAGGAAATGGATGCTGAGCTTGAAGCTTTGCAAAAGGAGCTTC
CATTCAGCGTACACGATGCCAATATTGGCATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-248)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

• AAA domain (AAA_30) (346-553)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (594-662)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	98.745	99.875	0.986