Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RS399_RS18275 Genome accession   NZ_CP135973
Coordinates   3641677..3644037 (+) Length   786 a.a.
NCBI ID   WP_084994757.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3636677..3649037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS18255 (RS399_18255) comN 3638010..3638306 (+) 297 WP_019259048.1 post-transcriptional regulator ComN -
  RS399_RS18260 (RS399_18260) secDF 3638345..3640558 (+) 2214 WP_084994760.1 protein translocase subunit SecDF -
  RS399_RS18265 (RS399_18265) - 3640713..3641210 (+) 498 WP_003237514.1 cation:proton antiporter regulatory subunit -
  RS399_RS18270 (RS399_18270) - 3641287..3641610 (+) 324 WP_019259046.1 lipopolysaccharide assembly LapA domain-containing protein -
  RS399_RS18275 (RS399_18275) recJ 3641677..3644037 (+) 2361 WP_084994757.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RS399_RS18280 (RS399_18280) - 3644043..3644555 (+) 513 WP_003237508.1 adenine phosphoribosyltransferase -
  RS399_RS18285 (RS399_18285) relA 3644725..3646929 (+) 2205 WP_003237506.1 GTP diphosphokinase -
  RS399_RS18290 (RS399_18290) dtd 3646942..3647382 (+) 441 WP_003237504.1 D-aminoacyl-tRNA deacylase -
  RS399_RS18295 (RS399_18295) - 3647408..3648961 (-) 1554 WP_084994754.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88298.74 Da        Isoelectric Point: 4.8790

>NTDB_id=888042 RS399_RS18275 WP_084994757.1 3641677..3644037(+) (recJ) [Bacillus inaquosorum strain SI3]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESAKLFLHTKDADFYDPFEMKGMKEAAERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
ELDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRQTTRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQQGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPDLRNRLNEIANNTLTEEDFIPVQEVDLVCDVEDITVESITEMNQLSPFGMLN
PKPHVLVENAVLEDVRKIGANKNHVKMTVRNESSQLDCVGFNKGELEEGIVPGSRISIVGEMSINEWNNRKRPQLMIKDA
AVSEWQLFDLRGKRMWEDTVSALPSAKRAIVSFKEDSTTLLQTEDLRREVHVISSVDQAKAFDLDGAYIVLLDPPPSLDM
LARLLEGEAPERIYFIFLNHEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGVKKRDLTDSQTYQEKQQLMELDQRLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=888042 RS399_RS18275 WP_084994757.1 3641677..3644037(+) (recJ) [Bacillus inaquosorum strain SI3]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCAAAGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGACCCTTTTGAAATGAAGGGCATGAAAGAAGCGGCAGAGCGTATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACACTGCAAAAGCT
GTCGGCTCAAGTTGATTTTTATATACCTGACCGCTTTAAAGAAGGATATGGCCCTAATGAACAGGCGTTTCGTTCGATTA
AAGAACGGGGCTTCTCTCTGATTATTACGGTTGATACAGGAATTGCCGCTGTGCATGAAGCAAAGGTGGCAAAGGAACTC
GAACTTGATGTCATCATTACCGATCACCATGAGCCGGGACCGGAGCTTCCGGATGTTCACGCGATCGTCCACCCGAAGCA
GCCGGGCTGCACCTACCCGTTTAAAGAATTGGCCGGGGTCGGAGTCGCGTTTAAGCTTGCTCACGCTTTATTGGGCGAAC
TTCCAGATGAGCTGCTTGACTTGGCGGCAATCGGTACTATTGCCGATCTTGTCCCGCTGCATGACGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTTCGGCAGACGACTCGGCTGGGTTTAAAAGAGCTGATCAAGCTGTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACAGTCGGTTTCCAGCTTGCACCAAGGCTGAATGCCGTCGGAAGAATTGAACAGGCTGATC
CCGCTGTTCATTTGCTCATGTCAGAGGATCCGTTTGAAGCGGAAGAGCTTGCCGCCGAAATTGATCAGCTGAACAAAGAA
CGCCAAAAGATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACAGCAAGGTCTCAATCAAACTGCAATCGT
CGTGGCCAAAGCCGGGTGGAATCCGGGAGTCGTCGGGATTGTGGCTTCAAAGTTAGTGGACCGTTTCTACAGACCGGCCA
TTGTGCTTGGCATTGATGAAGAAAAAGGGATTGCTAAAGGTTCGGCCCGAAGCATAAGGGGCTTTAATTTATTCGAGAGC
CTTTCTGAATGCAGAGATATTCTCCCTCATTTCGGCGGCCATCCAATGGCGGCGGGGATGACGCTGAATGCCGAAGATGT
GCCGGATTTGCGTAACAGGCTGAATGAAATAGCGAACAACACGCTTACGGAAGAAGATTTTATTCCTGTACAGGAAGTCG
ATCTTGTTTGCGATGTCGAGGACATTACAGTTGAAAGCATCACAGAGATGAACCAGCTGTCCCCATTTGGCATGCTGAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCTGTGCTGGAAGATGTCCGCAAGATCGGGGCTAATAAAAATCATGTCAAAAT
GACGGTCAGAAACGAGTCATCCCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTTGAAGAAGGCATCGTCCCGGGTT
CAAGAATTTCAATTGTCGGCGAGATGTCAATCAACGAATGGAACAATAGAAAAAGACCGCAGCTTATGATTAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGATGTGGGAAGACACAGTTTCCGCCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAGACTGAAGACCTTCGCCGCGAAGTGCACGTCATTA
GCTCTGTAGATCAAGCGAAGGCGTTTGACCTCGATGGTGCATATATTGTATTACTTGATCCGCCGCCTTCGTTGGACATG
CTTGCACGTTTGCTGGAAGGCGAGGCGCCTGAGCGGATATATTTCATTTTTCTCAATCATGAGGACCACTTTTTATCAAC
TTTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTGTTGAAAAGAGGCGCTTTTGACGTAAAAAAACACGGTT
CAGAGCTTGCAAGACATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTAGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGGTTAGCGGAGTAAAGAAACGCGACTTAACAGACTCACAAACATATCAGGAGAA
ACAGCAGCTGATGGAACTGGATCAAAGGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

96.692

100

0.967