Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RS399_RS01170 Genome accession   NZ_CP135973
Coordinates   254013..254792 (-) Length   259 a.a.
NCBI ID   WP_003238551.1    Uniprot ID   A0A9W5PD99
Organism   Bacillus inaquosorum strain SI3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 249013..259792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS01140 (RS399_01140) fliH 249029..249781 (-) 753 WP_060398627.1 flagellar assembly protein FliH -
  RS399_RS01145 (RS399_01145) fliG 249774..250790 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  RS399_RS01150 (RS399_01150) fliF 250803..252413 (-) 1611 WP_084992469.1 flagellar basal-body MS-ring/collar protein FliF -
  RS399_RS01155 (RS399_01155) fliE 252459..252779 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  RS399_RS01160 (RS399_01160) flgC 252791..253243 (-) 453 WP_019258394.1 flagellar basal body rod protein FlgC -
  RS399_RS01165 (RS399_01165) flgB 253243..253632 (-) 390 WP_084992471.1 flagellar basal body rod protein FlgB -
  RS399_RS01170 (RS399_01170) codY 254013..254792 (-) 780 WP_003238551.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RS399_RS01175 (RS399_01175) hslU 254832..256235 (-) 1404 WP_019258392.1 HslU--HslV peptidase ATPase subunit -
  RS399_RS01180 (RS399_01180) clpQ 256252..256797 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  RS399_RS01185 (RS399_01185) xerC 256810..257724 (-) 915 WP_084992475.1 tyrosine recombinase XerC -
  RS399_RS01190 (RS399_01190) trmFO 257792..259099 (-) 1308 WP_084992477.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29036.26 Da        Isoelectric Point: 4.7210

>NTDB_id=887984 RS399_RS01170 WP_003238551.1 254013..254792(-) (codY) [Bacillus inaquosorum strain SI3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=887984 RS399_RS01170 WP_003238551.1 254013..254792(-) (codY) [Bacillus inaquosorum strain SI3]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AACGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAGAATAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACCCTCATTCTTTCACGTTTACAGGATC
AATTTCATGATGATGATTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGCATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCAAGTAAAATCGCAGACCGCGTCGGCATTACCC
GCTCTGTGATTGTTAATGCACTCAGAAAGCTGGAAAGCGCCGGTGTCATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467