Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RO483_RS00655 Genome accession   NZ_CP135968
Coordinates   142505..143230 (-) Length   241 a.a.
NCBI ID   WP_205461479.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain S10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137505..148230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO483_RS00630 (RO483_00630) - 138658..139149 (+) 492 WP_047103746.1 type II secretion system protein M -
  RO483_RS00635 (RO483_00635) - 139151..139912 (+) 762 WP_017635007.1 type II secretion system protein N -
  RO483_RS00640 (RO483_00640) cysQ 140205..141032 (-) 828 WP_205461481.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  RO483_RS00645 (RO483_00645) nudE 141077..141646 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  RO483_RS00650 (RO483_00650) nfuA 141823..142407 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  RO483_RS00655 (RO483_00655) comF 142505..143230 (-) 726 WP_205461479.1 phosphoribosyltransferase family protein Machinery gene
  RO483_RS00660 (RO483_00660) bioH 143315..144082 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  RO483_RS00665 (RO483_00665) - 144207..144671 (+) 465 WP_005379316.1 hypothetical protein -
  RO483_RS00670 (RO483_00670) - 144776..147097 (-) 2322 WP_315956758.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27813.10 Da        Isoelectric Point: 9.7558

>NTDB_id=887904 RO483_RS00655 WP_205461479.1 142505..143230(-) (comF) [Vibrio alginolyticus strain S10]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSMCGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=887904 RO483_RS00655 WP_205461479.1 142505..143230(-) (comF) [Vibrio alginolyticus strain S10]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTATTGAGCAGTCAATGTGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATGTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTGTACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473