Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RUL31_RS14175 Genome accession   NZ_CP135964
Coordinates   2889205..2891565 (-) Length   786 a.a.
NCBI ID   WP_315915491.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2884205..2896565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS14155 (RUL31_14155) - 2884266..2885825 (+) 1560 WP_315915487.1 SH3 domain-containing protein -
  RUL31_RS14160 (RUL31_14160) dtd 2885858..2886301 (-) 444 WP_315915488.1 D-aminoacyl-tRNA deacylase -
  RUL31_RS14165 (RUL31_14165) relA 2886314..2888518 (-) 2205 WP_003325298.1 GTP diphosphokinase -
  RUL31_RS14170 (RUL31_14170) - 2888687..2889199 (-) 513 WP_003325297.1 adenine phosphoribosyltransferase -
  RUL31_RS14175 (RUL31_14175) recJ 2889205..2891565 (-) 2361 WP_315915491.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RUL31_RS14180 (RUL31_14180) - 2891633..2891971 (-) 339 WP_010789338.1 lipopolysaccharide assembly LapA domain-containing protein -
  RUL31_RS14185 (RUL31_14185) - 2892048..2892545 (-) 498 WP_003325293.1 cation:proton antiporter regulatory subunit -
  RUL31_RS14190 (RUL31_14190) secDF 2892743..2894965 (-) 2223 WP_315915493.1 protein translocase subunit SecDF -
  RUL31_RS14195 (RUL31_14195) - 2895004..2895300 (-) 297 WP_003325291.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88151.84 Da        Isoelectric Point: 4.9308

>NTDB_id=887837 RUL31_RS14175 WP_315915491.1 2889205..2891565(-) (recJ) [Bacillus atrophaeus strain CD303]
MLASKMRWEIQRPDQDKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLNTKEADFYDPFEMKGMKEAVERIKEAISQQ
EPIMIYGDYDADGVTSTSVMLKTLQKLSAHVDFYIPDRFKEGYGPNEQAFRSIKEQGFSLIITVDTGIAAVHEAEAAKKL
GLDVIITDHHEPGPVLPDVCAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGALPEDLLDLAAIGTIADLVPLHDENRLL
ATLGMQKLRMTNRPGLKALIKLSGGDIGQANEETIGFQLAPRLNAVGRIEQADPAVHLLMTEDEFEADELATEIDQLNKE
RQKIVSKMTDEAIEMVEQQGLNGSAIVVAKPGWNPGVVGIVASKLVDRFYRPAVVLGIDEEKGIAKGSARSIKGFDLFKS
LSSCRDILPHFGGHPMAAGMTLSADDVSDLRDRLNQIADETLTEEDFIPVQEIDLVCSVEDITVESISEINLLSPFGMQN
PKPHVMVENALLEDVRRIGANKNHIKMTVKDQSAKLDCVGFHKGELETGIVPGSRISLVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEETLVALPSEKRVIVCFKEETKQLLQNEELRHQLHAVSSEQEARDLELDGAYVVFLDAPPSLDL
LSSLVEGKRPERVYFIFMNNEEHFLSAFPTRDYFKWYYGFLLKRGTFDLKTHGSELAKHKGWTKDTINFMTKVFFDLGFV
RIENGVLSVIYDVKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMNQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=887837 RUL31_RS14175 WP_315915491.1 2889205..2891565(-) (recJ) [Bacillus atrophaeus strain CD303]
ATGTTAGCGTCAAAAATGCGTTGGGAAATACAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCTCTGCTTGTAAAAAGAGGATTTGATACAGCGGAAAGCGCGAGGCTGTTTTTAAATACAAAAG
AAGCTGATTTTTATGATCCCTTTGAGATGAAGGGCATGAAAGAAGCAGTTGAGCGGATTAAAGAGGCCATTTCACAGCAA
GAGCCCATTATGATATACGGAGATTATGATGCGGACGGCGTCACCAGTACGTCCGTCATGCTGAAAACATTACAAAAGCT
CTCGGCTCACGTTGACTTTTACATACCTGACCGGTTTAAAGAGGGCTACGGACCGAATGAGCAAGCCTTCCGATCGATTA
AAGAGCAAGGCTTCTCCCTTATTATCACGGTTGATACGGGGATTGCGGCTGTTCATGAAGCAGAGGCAGCGAAGAAACTA
GGACTGGATGTCATCATCACTGACCACCATGAGCCCGGCCCTGTGCTGCCTGATGTGTGTGCCATTGTTCATCCGAAGCA
GCCGGGTTGCACCTATCCGTTTAAGGAGCTTGCCGGAGTGGGTGTGGCGTTTAAGCTTGCACATGCTCTTTTAGGCGCTT
TACCTGAGGACCTGCTCGATTTGGCGGCAATCGGAACTATAGCCGATCTTGTGCCGCTGCATGATGAAAACAGATTATTA
GCAACGTTAGGCATGCAGAAGCTTCGAATGACAAACCGGCCGGGGCTAAAAGCATTGATTAAACTGTCAGGCGGTGACAT
CGGACAAGCGAATGAAGAAACAATTGGCTTTCAGCTTGCACCGAGGCTTAATGCTGTCGGGAGAATTGAACAGGCTGATC
CGGCTGTCCATCTGCTGATGACAGAGGATGAGTTCGAAGCAGATGAGCTTGCAACTGAAATCGACCAGCTCAACAAAGAG
CGCCAAAAAATTGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAGCAGCAAGGGCTCAATGGATCTGCCATCGT
AGTAGCAAAGCCCGGCTGGAACCCCGGGGTTGTCGGCATTGTGGCTTCAAAGCTTGTTGACCGTTTTTACCGTCCGGCCG
TTGTTCTTGGAATTGATGAAGAAAAGGGCATCGCGAAAGGATCGGCTCGAAGCATTAAAGGCTTTGATTTATTTAAAAGC
CTTTCTTCTTGCAGAGACATCCTTCCCCATTTCGGAGGACATCCGATGGCTGCAGGAATGACACTTTCTGCCGATGATGT
ATCTGACTTGAGGGACAGGCTCAATCAAATCGCGGATGAGACGCTTACAGAAGAAGATTTTATTCCAGTTCAGGAAATTG
ATCTCGTATGCAGCGTAGAGGATATTACGGTTGAAAGCATTTCTGAAATCAATCTCCTGTCTCCCTTTGGCATGCAGAAT
CCGAAACCGCATGTGATGGTGGAAAATGCACTTTTGGAAGACGTCCGGAGAATCGGAGCCAATAAAAACCATATCAAAAT
GACAGTCAAAGACCAATCGGCAAAGCTTGATTGTGTCGGCTTTCATAAAGGGGAGCTTGAGACAGGTATTGTGCCAGGTT
CACGAATCTCATTAGTCGGCGAAATGTCGATTAACGAATGGAATAACAGAAAAAAACCCCAGTTAATGATAAAGGATGCA
GCCGTTTCTGAGTGGCAGCTGTTTGACTTGCGTGGAAAACGTACGTGGGAAGAGACATTAGTTGCGCTTCCGTCTGAAAA
ACGGGTCATTGTTTGTTTTAAGGAGGAAACGAAACAGCTGCTTCAAAACGAAGAGCTGCGCCATCAGCTGCATGCGGTAA
GCTCGGAGCAAGAAGCGAGAGATCTTGAACTAGACGGCGCATATGTGGTATTCCTTGATGCGCCTCCTTCATTAGATCTG
CTTTCAAGCTTGGTAGAAGGAAAGAGACCCGAGCGTGTCTATTTTATCTTTATGAATAACGAGGAGCATTTTCTGTCAGC
ATTTCCGACCCGGGATTATTTTAAATGGTACTACGGTTTCTTGCTGAAAAGAGGAACTTTTGATCTGAAAACACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGACAAAAGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AGAATAGAGAATGGCGTGCTGTCTGTTATTTATGATGTGAAAAAACGCGATTTGACAGACTCGCAAACCTATCAGGCAAA
ACAGCAGCTGATGGAATTGGATCAGAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
ATCAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

84.606

100

0.846