Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RUL31_RS08950 Genome accession   NZ_CP135964
Coordinates   1777183..1777962 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772183..1782962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS08930 (RUL31_08930) trmFO 1772878..1774185 (+) 1308 WP_063637671.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RUL31_RS08935 (RUL31_08935) xerC 1774252..1775166 (+) 915 WP_010788602.1 tyrosine recombinase XerC -
  RUL31_RS08940 (RUL31_08940) clpQ 1775180..1775725 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  RUL31_RS08945 (RUL31_08945) hslU 1775733..1777145 (+) 1413 WP_255265367.1 HslU--HslV peptidase ATPase subunit -
  RUL31_RS08950 (RUL31_08950) codY 1777183..1777962 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RUL31_RS08955 (RUL31_08955) flgB 1778383..1778772 (+) 390 WP_315916902.1 flagellar basal body rod protein FlgB -
  RUL31_RS08960 (RUL31_08960) flgC 1778772..1779221 (+) 450 WP_061670771.1 flagellar basal body rod protein FlgC -
  RUL31_RS08965 (RUL31_08965) fliE 1779232..1779552 (+) 321 WP_003328948.1 flagellar hook-basal body complex protein FliE -
  RUL31_RS08970 (RUL31_08970) fliF 1779596..1781203 (+) 1608 WP_035175119.1 flagellar basal-body MS-ring/collar protein FliF -
  RUL31_RS08975 (RUL31_08975) fliG 1781216..1782232 (+) 1017 WP_315916903.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=887817 RUL31_RS08950 WP_003328951.1 1777183..1777962(+) (codY) [Bacillus atrophaeus strain CD303]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=887817 RUL31_RS08950 WP_003328951.1 1777183..1777962(+) (codY) [Bacillus atrophaeus strain CD303]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGAAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTAAGCCGCAGAGGAAAGCTGTTAGGCTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAAAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTAATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCGATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCACTCAGAAAGCTTGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAACAACAAGTTCTTGATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471