Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RUL31_RS08920 Genome accession   NZ_CP135964
Coordinates   1769639..1770538 (+) Length   299 a.a.
NCBI ID   WP_315916900.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1764639..1775538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS08900 (RUL31_08900) - 1765289..1767037 (+) 1749 WP_315916898.1 hypothetical protein -
  RUL31_RS08905 (RUL31_08905) - 1767034..1767315 (+) 282 WP_315916899.1 FlhB-like flagellar biosynthesis protein -
  RUL31_RS08910 (RUL31_08910) sucC 1767489..1768646 (+) 1158 WP_010788598.1 ADP-forming succinate--CoA ligase subunit beta -
  RUL31_RS08915 (RUL31_08915) sucD 1768675..1769577 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  RUL31_RS08920 (RUL31_08920) dprA 1769639..1770538 (+) 900 WP_315916900.1 DNA-processing protein DprA Machinery gene
  RUL31_RS08925 (RUL31_08925) topA 1770727..1772802 (+) 2076 WP_315916901.1 type I DNA topoisomerase -
  RUL31_RS08930 (RUL31_08930) trmFO 1772878..1774185 (+) 1308 WP_063637671.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RUL31_RS08935 (RUL31_08935) xerC 1774252..1775166 (+) 915 WP_010788602.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33217.29 Da        Isoelectric Point: 9.5634

>NTDB_id=887816 RUL31_RS08920 WP_315916900.1 1769639..1770538(+) (dprA) [Bacillus atrophaeus strain CD303]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTEPHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPTWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=887816 RUL31_RS08920 WP_315916900.1 1769639..1770538(+) (dprA) [Bacillus atrophaeus strain CD303]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGAACCGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCCGCGC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATATCCGACATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTTATAAAAGGCCGGAAAATTGGAGTGGTAGGTACGCGAAATCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTTACAAAAGAGCTTGCAGGCAACCAGTGGATCATTGTAAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCAAAAATGGCATTTCC
CCATGAGAAACCGTTTAATAAGCGGGTTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCTGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCCGCTGAGGATATTTACAGTGAGTTATCGGAGGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

74.247

100

0.742