Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   RS893_RS11825 Genome accession   NZ_CP135918
Coordinates   2831935..2833041 (-) Length   368 a.a.
NCBI ID   WP_315791332.1    Uniprot ID   -
Organism   Fischerella sp. JS2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2826935..2838041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS893_RS11805 - 2827058..2829508 (-) 2451 WP_315791329.1 AMIN domain-containing protein -
  RS893_RS11810 - 2829771..2830151 (-) 381 Protein_2343 four helix bundle protein -
  RS893_RS11815 - 2830156..2830911 (-) 756 WP_315791330.1 pilus assembly protein PilO -
  RS893_RS11820 - 2830908..2831672 (-) 765 WP_315791331.1 PilN domain-containing protein -
  RS893_RS11825 pilM 2831935..2833041 (-) 1107 WP_315791332.1 pilus assembly protein PilM Machinery gene
  RS893_RS11830 - 2833233..2834537 (+) 1305 WP_315791333.1 sugar ABC transporter substrate-binding protein -
  RS893_RS11835 - 2834614..2836011 (-) 1398 WP_315791334.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RS893_RS11840 - 2836224..2836349 (-) 126 WP_102152929.1 photosystem II protein Y -
  RS893_RS11845 - 2836749..2837276 (-) 528 WP_315791335.1 gamma carbonic anhydrase family protein -
  RS893_RS11850 - 2837266..2837448 (+) 183 WP_146007658.1 hypothetical protein -
  RS893_RS11855 - 2837479..2837991 (+) 513 WP_035137979.1 TIGR02652 family protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 40473.57 Da        Isoelectric Point: 4.5172

>NTDB_id=887647 RS893_RS11825 WP_315791332.1 2831935..2833041(-) (pilM) [Fischerella sp. JS2]
MVKSINNLFSKSKGGVGIELAPQCVKVARLRKQRQGLKLDALTSVPVPEGVFVDGQIADPPAMAQIIQQALTESKIKASR
VATAVTGRDSIVRLIPVPSELDDKELREMVLHHEASLYLPYPREEADVDYQKLGYFIDEDGIEKVQVLLVATRKEITDTY
INTFEQAGLQIDVLEINSFALIRTIRDQLRQYGPQEAAVLVDIEFDSTEIAIIVNGVPQFSRTVPLGTYQMQMALARAMS
LPASRDMELLQGMTIPLNTMEGAKTGVTEANPGIAAMMRVLGELTDELRRSIDFYLNQSENLEVAQIFLSGSGGGLAQLD
EFFTQRLSLPTSQVDPIGSLSLQVEEEKFPTVQRPGLGIVLGLGMREV

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=887647 RS893_RS11825 WP_315791332.1 2831935..2833041(-) (pilM) [Fischerella sp. JS2]
GTGGTTAAAAGCATCAATAATCTGTTTAGCAAATCTAAGGGCGGAGTTGGCATCGAACTTGCGCCACAATGCGTCAAGGT
CGCTCGTTTACGCAAACAACGCCAAGGTCTGAAACTAGACGCTTTAACATCAGTACCGGTTCCAGAAGGTGTTTTTGTTG
ATGGTCAAATTGCTGATCCTCCAGCAATGGCACAAATCATTCAGCAGGCACTCACAGAGAGTAAAATCAAAGCTTCTCGC
GTTGCCACTGCTGTCACGGGACGAGATTCAATTGTACGCCTTATACCTGTTCCATCAGAATTAGATGATAAAGAACTACG
CGAGATGGTGTTACACCATGAAGCAAGCTTATATTTACCCTATCCTCGTGAAGAAGCTGATGTAGATTATCAAAAACTTG
GGTACTTTATAGATGAGGATGGGATTGAAAAAGTACAAGTGCTGCTGGTTGCAACTCGCAAGGAAATTACTGATACCTAC
ATAAATACATTCGAGCAGGCAGGATTACAAATTGATGTCTTAGAAATCAATTCTTTTGCACTGATTCGGACAATTCGTGA
TCAGTTGCGGCAATACGGGCCACAAGAAGCAGCAGTTTTAGTCGATATAGAATTCGACAGTACAGAAATTGCCATCATCG
TTAACGGAGTACCGCAATTTTCACGGACAGTCCCCTTGGGGACTTATCAAATGCAAATGGCACTGGCCAGAGCAATGAGT
TTACCTGCGTCACGAGATATGGAATTGTTGCAGGGGATGACTATTCCTCTAAATACTATGGAAGGTGCAAAAACAGGTGT
CACCGAGGCTAATCCTGGTATAGCAGCAATGATGCGGGTGTTGGGAGAACTGACAGATGAACTACGCCGTTCCATCGATT
TTTATCTCAACCAAAGTGAAAACTTAGAGGTAGCGCAGATTTTCTTGTCAGGATCAGGTGGAGGACTGGCCCAGTTGGAT
GAGTTCTTCACGCAACGATTGAGTTTGCCGACCTCTCAAGTAGACCCCATTGGATCTTTATCCTTGCAAGTTGAGGAAGA
AAAGTTTCCAACTGTGCAACGTCCTGGGTTGGGGATTGTGCTGGGGCTTGGGATGCGGGAGGTGTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-238)

Type IV pilus assembly protein PilM; (PilM_2)

(283-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

63.488

99.728

0.633