Detailed information NTG0886591

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: RRU94_RS14020
• Genome accession: NZ_CP135439
• Coordinates: 1225378..1227744 (+)
• Length: 788 a.a.
• NCBI ID: WP_315694990.1
• Uniprot ID: A0AA96N5B6
• Organism: Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1220378..1232744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RRU94_RS13995 (RRU94_13995)	-	1220543..1221817 (-)	1275	WP_315695964.1	replication-associated recombination protein A	-
RRU94_RS14000 (RRU94_14000)	cymR	1221940..1222359 (+)	420	WP_242233371.1	cysteine metabolism transcriptional regulator CymR	-
RRU94_RS14005 (RRU94_14005)	-	1222372..1223505 (+)	1134	WP_315694985.1	cysteine desulfurase family protein	-
RRU94_RS14010 (RRU94_14010)	mnmA	1223521..1224633 (+)	1113	WP_315694987.1	tRNA 2-thiouridine(34) synthase MnmA	-
RRU94_RS14015 (RRU94_14015)	-	1224703..1225359 (+)	657	WP_251271103.1	tetratricopeptide repeat protein	-
RRU94_RS14020 (RRU94_14020)	recD2	1225378..1227744 (+)	2367	WP_315694990.1	ATP-dependent RecD-like DNA helicase	Machinery gene
RRU94_RS14025 (RRU94_14025)	-	1227793..1227957 (+)	165	WP_242233376.1	hypothetical protein	-
RRU94_RS14030 (RRU94_14030)	alaS	1228282..1230912 (+)	2631	WP_315694993.1	alanine--tRNA ligase	-
RRU94_RS14035 (RRU94_14035)	-	1230993..1231268 (+)	276	WP_242233378.1	IreB family regulatory phosphoprotein	-
RRU94_RS14040 (RRU94_14040)	ruvX	1231265..1231681 (+)	417	WP_315694996.1	Holliday junction resolvase RuvX	-
RRU94_RS14045 (RRU94_14045)	-	1231696..1231983 (+)	288	WP_251271099.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 788 a.a.
• Molecular weight: 88214.62 Da
• Isoelectric Point: 4.6915

>NTDB_id=886591 RRU94_RS14020 WP_315694990.1 1225378..1227744(+) (recD2) [Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016]
MQEKRDLFTEGEQFLKGRHIVTIFRNDENFYTVLRVRVTETDGTYDEKEAVVTGYFPAVHEHEMYEFRGHFKDHPRFGRQ
FIARTAQKEMPQTKQGLVAYLSGDLFKGIGKKTAESIVEILGEQAISKIIADKSCLQNVPRLPAEKADVLYDTLMKHQGL
EQIMVALNEFGFGPQLSMKIYQMYYEESLNVIQENPYRLVENIEGIGFVRADEIGAQIGISGGHPDRLKAAILYSLEQQC
LQDGHCYIEAEELLRNVKELLDKSANGTAEFEAIAKRLIELEEEGKVAGEEQRVYMPSLYFSEKGLVTNVQRVMEQEPHS
FPESEFLLALGELEDRTGISYAPSQKEAIQTALTSPVMILTGGPGTGKTTVIKGIVELYGELHGLSLDPKKYDKDEPFPI
KLCAPTGRAAKRMMESTGLPAVTIHRLLGFNGQEDPEEEGNAVGGRLLIVDETSMVDIWLAHQLFKAIPDDMQVILVGDE
DQLPSVGPGQVLKDMLASGVIPSVRLTDIYRQEEGSSIISLAHNIKDGVVPETLTAPQKDRSFLRCGTGQIADVIEKVVK
NAAGKGYEPRDIQVLAPMYKGPAGIDKLNEVLQQVLNPNEDGQRKEIAFGPVKYRIGDKVLQLVNQPEQNVFNGDIGEIV
AIFYAKENTEKEDMVIVSYEGNEVTYTRNDLNQITHAFCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRSRQF
LILCGEEEAFRIGIARNDDLVRKTGLADRLSGQEDPEKEAEALTEETWMSIDPMIGMEGITPFDFMVV

Nucleotide

• Length: 2367 bp

>NTDB_id=886591 RRU94_RS14020 WP_315694990.1 1225378..1227744(+) (recD2) [Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016]
GTGCAGGAAAAACGGGATTTATTCACAGAAGGAGAGCAGTTTTTAAAAGGACGGCATATTGTCACGATTTTCCGGAACGA
TGAAAACTTTTATACCGTTCTGCGTGTCCGTGTGACCGAAACGGACGGAACGTATGATGAAAAAGAAGCGGTGGTAACCG
GGTATTTCCCTGCTGTCCATGAGCATGAAATGTATGAGTTTCGCGGTCATTTCAAAGATCATCCAAGGTTTGGGCGGCAG
TTTATTGCCCGCACGGCTCAAAAAGAAATGCCGCAGACGAAGCAGGGGCTTGTGGCTTATTTATCCGGGGACTTATTTAA
AGGCATCGGCAAAAAAACGGCTGAATCGATTGTAGAGATCCTTGGCGAGCAGGCGATCTCCAAAATTATTGCGGATAAAA
GCTGCCTGCAAAACGTACCGCGCCTCCCGGCTGAAAAAGCGGATGTACTGTACGATACGCTGATGAAGCACCAAGGGCTT
GAGCAGATTATGGTGGCTCTCAATGAATTTGGCTTCGGGCCGCAGCTATCTATGAAAATTTATCAAATGTATTACGAAGA
GTCATTGAACGTCATTCAAGAAAACCCATACCGGCTTGTGGAAAACATCGAAGGAATCGGTTTTGTACGAGCTGATGAAA
TTGGTGCTCAAATTGGCATTAGCGGAGGGCATCCCGATCGCCTGAAAGCTGCGATTTTATATTCTCTTGAACAGCAGTGC
CTTCAAGATGGCCACTGCTATATAGAAGCAGAAGAACTGCTGAGAAACGTAAAGGAGCTGCTCGATAAAAGCGCGAATGG
CACAGCGGAATTCGAGGCGATCGCCAAACGGCTGATTGAGCTGGAGGAAGAAGGGAAAGTAGCCGGAGAAGAGCAGCGGG
TTTATATGCCGTCTCTTTATTTTTCGGAAAAAGGGCTCGTCACCAACGTGCAGCGTGTAATGGAGCAGGAGCCTCATTCG
TTTCCGGAGTCGGAGTTTTTGCTTGCGCTCGGTGAGCTCGAAGACCGTACCGGCATTTCTTACGCTCCTTCCCAGAAGGA
AGCCATTCAAACTGCGCTTACTTCACCGGTGATGATTTTAACGGGAGGACCTGGAACGGGGAAAACAACGGTCATAAAAG
GGATTGTTGAATTGTACGGTGAACTTCATGGCTTATCGCTCGATCCGAAAAAATATGACAAAGACGAGCCTTTTCCAATC
AAGCTTTGCGCGCCGACAGGCCGCGCGGCAAAGAGGATGATGGAGTCAACCGGGCTTCCTGCTGTGACCATCCATCGGCT
TCTTGGATTCAACGGACAGGAAGATCCGGAGGAAGAAGGCAATGCAGTTGGAGGACGGCTGTTGATTGTCGATGAAACGT
CGATGGTAGATATATGGCTTGCCCATCAGCTGTTTAAAGCGATACCGGACGATATGCAGGTCATACTAGTGGGAGATGAA
GACCAGCTTCCATCGGTTGGACCGGGGCAGGTATTAAAAGATATGCTTGCCTCAGGCGTCATTCCGTCCGTGCGGCTGAC
GGATATTTACCGCCAGGAAGAAGGCTCTTCCATCATCAGCCTGGCCCACAACATCAAAGACGGCGTGGTTCCGGAAACAC
TCACGGCTCCCCAGAAAGACCGTTCTTTTCTCCGGTGTGGAACCGGACAAATTGCGGATGTCATCGAAAAAGTCGTGAAA
AATGCTGCGGGGAAAGGATATGAGCCGAGGGACATTCAAGTGCTCGCCCCCATGTATAAAGGACCGGCAGGCATTGATAA
GCTCAACGAGGTGCTGCAGCAGGTGCTCAACCCAAACGAAGACGGCCAGCGGAAAGAAATTGCGTTTGGCCCGGTTAAAT
ATCGAATTGGCGACAAGGTGCTGCAGCTCGTAAATCAGCCGGAGCAAAATGTATTTAATGGAGATATCGGAGAGATTGTC
GCCATTTTTTATGCAAAAGAAAACACAGAAAAAGAAGACATGGTCATTGTTTCATACGAAGGCAATGAAGTAACCTATAC
ACGCAATGACTTAAACCAAATTACACATGCGTTTTGCTGCTCAATTCATAAGTCGCAGGGAAGTGAATTCCCGATCGTGA
TTTTGCCGGTCGTTAAAAGCTATTATCGTATGCTGAGGCGGAATCTTCTGTATACAGCCATTACGAGAAGCCGGCAGTTT
TTAATCCTGTGCGGCGAGGAAGAAGCGTTTCGAATCGGCATTGCCCGCAACGATGACCTGGTACGAAAAACAGGCCTTGC
GGACCGGCTCTCCGGTCAAGAAGACCCCGAAAAAGAAGCAGAAGCACTGACTGAAGAAACATGGATGTCGATCGATCCAA
TGATCGGCATGGAAGGTATTACGCCTTTCGATTTTATGGTGGTATAG

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (156-247)

• AAA domain (AAA_30) (341-547)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (588-657)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	63.145	100	0.637