Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   RRU92_RS09265 Genome accession   NZ_CP135436
Coordinates   1937826..1938779 (-) Length   317 a.a.
NCBI ID   WP_315639491.1    Uniprot ID   -
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932826..1943779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS09240 (RRU92_09240) - 1932844..1933332 (-) 489 WP_315639485.1 DUF5590 domain-containing protein -
  RRU92_RS09245 (RRU92_09245) - 1933594..1934142 (+) 549 WP_315639486.1 NADPH-dependent FMN reductase -
  RRU92_RS09250 (RRU92_09250) - 1934195..1935385 (-) 1191 WP_315639487.1 O-antigen ligase -
  RRU92_RS09255 (RRU92_09255) birA 1935597..1936532 (+) 936 WP_315639488.1 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA -
  RRU92_RS09260 (RRU92_09260) - 1936587..1937777 (-) 1191 WP_315639490.1 acetate kinase -
  RRU92_RS09265 (RRU92_09265) comYH 1937826..1938779 (-) 954 WP_315639491.1 class I SAM-dependent methyltransferase Machinery gene
  RRU92_RS09270 (RRU92_09270) - 1938878..1940485 (-) 1608 WP_315639492.1 CTP synthase -
  RRU92_RS09275 (RRU92_09275) rpoE 1940807..1941382 (-) 576 WP_000418422.1 DNA-directed RNA polymerase subunit delta -
  RRU92_RS09280 (RRU92_09280) - 1941675..1942874 (-) 1200 WP_315639494.1 ABC transporter permease -
  RRU92_RS09285 (RRU92_09285) - 1942871..1943764 (-) 894 WP_311523577.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36047.23 Da        Isoelectric Point: 4.2412

>NTDB_id=886561 RRU92_RS09265 WP_315639491.1 1937826..1938779(-) (comYH) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MYFEKIEQAYTYLLENVQIIQNDLTTNFYDALIEQNGIYLDGQTNLEDVKKNNQALKRLALRKEEWLRTYQFLLMKAAQT
EPLQANHQFTPDAIGHLMIFLIEQLWPAEDLSLLELGSGMGILGASFLTSMNKKVDYLGIELDDLLIDLAASMAEVMDLQ
MGFVQGDAVRPQVLKESDIIVSDLPIGYYPDDQIASRYQVAAKDEHTYAHHLLMEQSLKYLKTGGYAIFLAPTDLLTSPQ
SDLLKSWLTDQAQLVAILALPEDLFAQGAQSKTIFVLQKKVGEGTDPFVYPLTSLRDPEILLEFKENFQNWCQEHEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=886561 RRU92_RS09265 WP_315639491.1 1937826..1938779(-) (comYH) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGTATTTTGAAAAAATTGAACAAGCATATACCTATTTACTAGAAAATGTCCAAATCATTCAAAATGATTTGACGACAAA
TTTTTACGATGCCTTGATTGAGCAAAATGGAATCTATCTGGATGGTCAGACAAATCTGGAAGATGTCAAGAAAAATAATC
AAGCATTAAAACGATTGGCTCTTCGAAAAGAAGAGTGGTTACGAACCTACCAATTCTTGTTAATGAAGGCAGCGCAAACA
GAACCTCTCCAAGCAAATCACCAGTTTACACCAGATGCCATTGGTCACTTGATGATTTTTCTGATAGAGCAACTGTGGCC
TGCTGAAGATCTAAGTTTATTAGAGTTGGGGTCTGGGATGGGAATTCTGGGCGCTAGCTTCTTAACGTCCATGAACAAAA
AGGTAGATTACCTTGGGATTGAACTAGATGACCTCTTGATCGATTTGGCTGCAAGTATGGCTGAAGTTATGGATCTGCAA
ATGGGCTTTGTCCAAGGAGATGCAGTACGTCCACAAGTATTAAAAGAAAGTGATATTATTGTGAGCGACCTCCCGATTGG
CTACTACCCAGACGATCAGATTGCCTCACGTTACCAAGTGGCAGCAAAGGATGAACATACTTACGCTCATCATCTATTAA
TGGAGCAATCACTCAAGTATCTTAAGACGGGAGGCTATGCTATTTTCCTTGCTCCAACAGATCTTTTGACGAGTCCCCAG
AGTGACCTCTTGAAATCTTGGCTGACTGATCAAGCTCAACTAGTCGCTATCCTAGCTTTACCAGAGGATCTATTCGCTCA
AGGAGCCCAGTCTAAGACCATTTTTGTTTTGCAAAAGAAGGTGGGAGAAGGTACAGATCCCTTTGTTTATCCACTTACTA
GCCTTCGGGATCCTGAAATTTTGTTGGAATTTAAGGAAAATTTTCAAAATTGGTGTCAAGAACATGAAATCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

55.556

99.369

0.552
  comYH Streptococcus mutans UA140

55.238

99.369

0.549