Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RRV45_RS16120 Genome accession   NZ_CP135435
Coordinates   3210768..3213134 (-) Length   788 a.a.
NCBI ID   WP_315665702.1    Uniprot ID   A0AA96S551
Organism   Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3205768..3218134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV45_RS16105 (RRV45_16105) dtd 3207360..3207800 (-) 441 WP_315665699.1 D-aminoacyl-tRNA deacylase -
  RRV45_RS16110 (RRV45_16110) - 3207813..3210008 (-) 2196 WP_315665700.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RRV45_RS16115 (RRV45_16115) - 3210265..3210777 (-) 513 WP_315665701.1 adenine phosphoribosyltransferase -
  RRV45_RS16120 (RRV45_16120) recJ 3210768..3213134 (-) 2367 WP_315665702.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RRV45_RS16125 (RRV45_16125) - 3213227..3214129 (-) 903 WP_315665703.1 cation diffusion facilitator family transporter -
  RRV45_RS16130 (RRV45_16130) secDF 3214244..3216511 (-) 2268 WP_315665704.1 protein translocase subunit SecDF -
  RRV45_RS16135 (RRV45_16135) - 3216849..3217145 (-) 297 WP_315665705.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88646.41 Da        Isoelectric Point: 4.9828

>NTDB_id=886480 RRV45_RS16120 WP_315665702.1 3210768..3213134(-) (recJ) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MLQSKTRWIVRKSDEEKQSLLVQQLNITPLLASLLVNRGIESPELAQSFLFDQNSEFHDPFLLADMEIAVSRIKKAIDNE
EPILIFGDYDADGVTSTTVMMKVLRELGANVEFYIPNRFTEGYGPNIPAFQYAAEIGIKLIITVDTGIAAVKEAAAAAEF
GLDLIITDHHEPGAELPKALAIIHPKIEGSHYPFRELAGVGVAFKLAHALYGKLPEHLLEIAAIGTIADLVSLKGENRLI
VKRGLNRLRSTNNVGLTALLKQNKVDPGSVTEETVGFLIAPRLNAAGRLDSADPAVDLLLTEDIFEAEAIAEEIEQMNKE
RQALVSKISEEAIRLVEENYPIDENAVLVIGEEGWNAGVVGIVASKLVERFYRPVICLSFDREKGIAKGSARSIFGFDLF
KNLSECRDILPHFGGHPMAAGMTLKLDHVDELRKRLNLAAKEQLTDEDFIPVTTLDGTVNMSEIHLTALEEMQMLAPFGM
DNPKPKILIKDASISNMRKIGSDQNHLKITIESEGSTLDGVGFGLGELYEHISPYSKISVIGELSINEWNNIRKPQIFLQ
DAAIQDWQLFDIRGIKRFEQLIDLIPKEQSKWIVFNKENAMKFPTYINENMITVSSYDEAAALNINQENVILTDLPPSKD
FLSKLFSGKNPSRVYAHFYKEESAFFSTLPKRDHFKWFYALILKKGPFSLQEYRDNIAKHKGWSKESIDFMSQVFLELDF
VKINNGNISVNTTSQKRDLTDSHIYEQRRKQYAIESELLYSTYQQLKSYFDSVIQGSVKIEEEVKEWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=886480 RRV45_RS16120 WP_315665702.1 3210768..3213134(-) (recJ) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
ATGTTACAATCAAAAACTCGCTGGATTGTGCGGAAATCAGATGAAGAAAAGCAAAGCCTTCTCGTTCAACAATTAAATAT
TACTCCTCTCCTTGCTTCATTGCTAGTAAATAGAGGAATAGAATCACCAGAATTAGCACAAAGTTTTCTATTTGATCAAA
ACTCAGAATTTCATGATCCTTTTTTATTGGCTGATATGGAAATTGCTGTATCACGGATAAAAAAGGCGATAGATAATGAA
GAACCGATACTAATCTTTGGAGATTATGATGCAGATGGTGTGACAAGCACGACCGTTATGATGAAAGTCCTTCGGGAATT
AGGCGCCAATGTCGAATTCTACATACCAAACCGGTTTACAGAAGGATACGGACCAAACATCCCAGCCTTTCAATATGCCG
CGGAAATAGGAATCAAACTGATTATTACGGTTGATACGGGAATAGCTGCAGTAAAGGAAGCGGCTGCCGCTGCTGAGTTT
GGACTGGATTTAATTATTACAGATCACCATGAACCAGGGGCAGAATTGCCTAAAGCATTGGCTATCATCCACCCAAAGAT
TGAAGGGAGCCACTATCCATTTCGTGAGCTTGCAGGTGTTGGGGTTGCATTTAAATTAGCTCATGCACTGTACGGGAAAC
TGCCGGAACATCTGCTGGAAATAGCGGCTATCGGAACAATTGCAGATTTAGTCTCCTTAAAAGGAGAGAATCGCTTAATT
GTAAAACGAGGCTTGAACAGGCTTAGGTCTACTAATAATGTTGGTTTAACAGCCTTATTAAAACAAAACAAGGTAGACCC
AGGCTCTGTAACAGAAGAAACGGTAGGGTTCCTGATCGCGCCACGATTAAATGCTGCTGGGAGATTGGATAGCGCAGACC
CAGCTGTTGATTTACTGCTAACTGAGGATATTTTTGAAGCTGAAGCGATAGCTGAGGAAATAGAACAAATGAACAAGGAA
AGGCAAGCACTTGTTAGCAAAATTTCTGAAGAAGCAATACGGCTAGTTGAAGAAAATTACCCAATTGATGAAAATGCAGT
GCTTGTCATTGGTGAAGAGGGCTGGAATGCAGGTGTAGTCGGAATTGTCGCTTCAAAGCTGGTAGAAAGATTCTACCGTC
CAGTCATTTGTTTAAGCTTTGATAGAGAAAAGGGCATAGCAAAAGGCTCTGCTCGAAGTATTTTTGGATTTGATTTATTT
AAAAACCTATCTGAATGCCGAGATATTTTACCTCATTTCGGCGGGCATCCGATGGCTGCGGGTATGACATTGAAATTGGA
TCATGTTGATGAGCTTAGGAAAAGACTCAATTTAGCAGCAAAGGAACAATTAACAGATGAGGACTTTATTCCAGTTACTA
CGTTGGATGGGACAGTAAATATGTCAGAGATTCATTTGACTGCTTTAGAGGAAATGCAAATGTTAGCTCCATTTGGCATG
GATAATCCGAAGCCAAAGATCTTAATTAAGGACGCTAGCATTTCAAATATGAGAAAGATCGGCTCAGATCAGAATCATTT
AAAAATAACAATTGAGAGTGAAGGCAGTACACTTGATGGCGTTGGATTCGGGCTGGGAGAATTATATGAGCATATTTCTC
CTTATTCTAAAATTTCCGTTATTGGGGAGCTTTCGATCAATGAGTGGAATAATATACGAAAGCCGCAAATTTTCCTTCAG
GATGCCGCCATTCAAGATTGGCAGCTATTTGACATTAGGGGAATTAAACGGTTTGAACAATTAATAGATTTGATTCCTAA
AGAGCAATCTAAATGGATTGTTTTTAATAAAGAAAATGCTATGAAGTTTCCAACATATATCAATGAGAATATGATAACAG
TAAGTTCATATGATGAAGCAGCGGCATTAAATATTAATCAAGAAAATGTAATTCTAACGGACCTTCCACCCTCAAAGGAT
TTTCTGTCCAAATTATTTTCTGGGAAAAATCCTTCAAGGGTATATGCTCATTTCTATAAAGAAGAGAGTGCCTTTTTTAG
CACACTTCCGAAAAGGGATCATTTTAAATGGTTCTATGCCTTAATATTGAAAAAGGGTCCATTCAGCCTTCAGGAGTATC
GGGACAATATTGCTAAGCATAAAGGATGGAGCAAAGAATCAATTGACTTCATGTCACAAGTGTTTTTAGAATTAGATTTT
GTTAAAATAAACAATGGAAACATTTCCGTTAATACGACTTCGCAAAAACGTGATTTAACTGATTCGCACATTTATGAGCA
GAGACGTAAACAGTACGCGATCGAAAGTGAATTGCTATATTCAACTTATCAGCAGTTAAAAAGCTATTTCGATTCAGTCA
TTCAAGGTTCTGTGAAAATTGAGGAGGAAGTAAAAGAATGGACTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

RecJ OB domain (RecJ_OB)

(456-561)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.381

98.477

0.536