Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RRV45_RS09330 Genome accession   NZ_CP135435
Coordinates   1879337..1880116 (+) Length   259 a.a.
NCBI ID   WP_315668536.1    Uniprot ID   A0AA96S6X7
Organism   Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1874337..1885116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV45_RS09310 (RRV45_09310) trmFO 1874918..1876231 (+) 1314 WP_315668532.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RRV45_RS09315 (RRV45_09315) xerC 1876288..1877190 (+) 903 WP_315668533.1 tyrosine recombinase XerC -
  RRV45_RS09320 (RRV45_09320) hslV 1877267..1877809 (+) 543 WP_315668534.1 ATP-dependent protease subunit HslV -
  RRV45_RS09325 (RRV45_09325) hslU 1877828..1879234 (+) 1407 WP_315668535.1 HslU--HslV peptidase ATPase subunit -
  RRV45_RS09330 (RRV45_09330) codY 1879337..1880116 (+) 780 WP_315668536.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RRV45_RS09335 (RRV45_09335) flgB 1880517..1880912 (+) 396 WP_315668537.1 flagellar basal body rod protein FlgB -
  RRV45_RS09340 (RRV45_09340) flgC 1880915..1881364 (+) 450 WP_315668538.1 flagellar basal body rod protein FlgC -
  RRV45_RS09345 (RRV45_09345) fliE 1881378..1881686 (+) 309 WP_315668539.1 flagellar hook-basal body complex protein FliE -
  RRV45_RS09350 (RRV45_09350) fliF 1881979..1883574 (+) 1596 WP_315668540.1 flagellar basal-body MS-ring/collar protein FliF -
  RRV45_RS09355 (RRV45_09355) fliG 1883587..1884603 (+) 1017 WP_315668541.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28969.17 Da        Isoelectric Point: 4.7998

>NTDB_id=886470 RRV45_RS09330 WP_315668536.1 1879337..1880116(+) (codY) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MDLLSRTRKINAMLQRAAGKPVNFKEMAETLSDVITANIFVVSRRGKLLGFAVNQQIENDRMKQMLADRQFPEEYTNNLF
NLQETSPNLDVESEYSAFPAENKDLFRTGLTTIVPIIGGGERLGTLILARLNDQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGSEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLFELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=886470 RRV45_RS09330 WP_315668536.1 1879337..1880116(+) (codY) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
ATGGATTTATTATCAAGAACTAGAAAAATTAATGCAATGCTGCAAAGAGCAGCAGGTAAACCTGTTAACTTTAAAGAAAT
GGCGGAAACATTAAGTGATGTTATTACTGCTAATATTTTCGTTGTAAGCAGACGTGGTAAGTTATTAGGCTTTGCTGTAA
ACCAGCAAATTGAAAATGATCGCATGAAGCAAATGCTTGCAGATCGCCAATTCCCTGAGGAGTACACGAATAATCTTTTC
AATCTTCAGGAGACTTCGCCAAACCTTGATGTTGAAAGTGAATATTCAGCTTTCCCTGCTGAAAATAAAGATCTTTTCAG
AACAGGGCTTACGACTATCGTTCCAATTATTGGTGGTGGAGAGCGTCTAGGAACACTAATTCTTGCAAGATTGAATGATC
AATTCCATGACGATGATTTAATTCTTGCCGAATATGGAGCAACAGTAGTTGGTATGGAAATTTTACGTGAAAAAGCAGAG
GAAATTGAAGAAGAAGCGCGCAGTAAAGCTGTTGTCCAAATGGCTATTAGTTCCCTTTCTTACAGTGAATTAGAAGCAAT
TGAGCATATTTTTGAAGAATTAAACGGCAGTGAAGGCTTGCTCGTTGCCTCAAAAATAGCTGATCGTGTTGGGATTACAA
GATCAGTAATCGTAAATGCTTTACGTAAATTAGAAAGTGCAGGAGTAATTGAATCAAGATCACTTGGTATGAAAGGAACC
TATATTAAGGTTCTAAATGATAAGTTTTTATTCGAGCTTGAGAAGTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

87.259

100

0.873
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.178

95.367

0.459