Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RP314_RS12325 Genome accession   NZ_CP135199
Coordinates   2454157..2454936 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain CMML21-47     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2449157..2459936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP314_RS12295 (RP314_12295) fliH 2449202..2449957 (-) 756 WP_077722194.1 flagellar assembly protein FliH -
  RP314_RS12300 (RP314_12300) fliG 2449950..2450966 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  RP314_RS12305 (RP314_12305) fliF 2450979..2452589 (-) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  RP314_RS12310 (RP314_12310) fliE 2452632..2452952 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  RP314_RS12315 (RP314_12315) flgC 2452963..2453415 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  RP314_RS12320 (RP314_12320) flgB 2453415..2453804 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  RP314_RS12325 (RP314_12325) codY 2454157..2454936 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RP314_RS12330 (RP314_12330) hslU 2454974..2456377 (-) 1404 WP_069448731.1 HslU--HslV peptidase ATPase subunit -
  RP314_RS12335 (RP314_12335) hslV 2456394..2456939 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  RP314_RS12340 (RP314_12340) xerC 2456955..2457872 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  RP314_RS12345 (RP314_12345) trmFO 2457942..2459249 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=886214 RP314_RS12325 WP_003154263.1 2454157..2454936(-) (codY) [Bacillus velezensis strain CMML21-47]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=886214 RP314_RS12325 WP_003154263.1 2454157..2454936(-) (codY) [Bacillus velezensis strain CMML21-47]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471