Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   K6J74_RS01360 Genome accession   NZ_AP024819
Coordinates   269250..270041 (+) Length   263 a.a.
NCBI ID   WP_260321632.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-012     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 264250..275041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J74_RS01340 (NHP190012_02810) - 264459..266279 (+) 1821 WP_221272143.1 menaquinone biosynthesis decarboxylase -
  K6J74_RS01345 (NHP190012_02820) - 266281..266928 (+) 648 WP_221272144.1 YggS family pyridoxal phosphate-dependent enzyme -
  K6J74_RS08350 (NHP190012_02830) - 266959..267639 (+) 681 WP_260321630.1 MmgE/PrpD family protein -
  K6J74_RS08355 (NHP190012_02840) - 267552..268382 (+) 831 WP_260321631.1 MmgE/PrpD family protein -
  K6J74_RS01355 (NHP190012_02850) - 268418..269281 (+) 864 WP_221272145.1 pirin family protein -
  K6J74_RS01360 (NHP190012_02860) comB8 269250..270041 (+) 792 WP_260321632.1 VirB8/TrbF family protein Machinery gene
  K6J74_RS01365 (NHP190012_02870) gatB 270080..271519 (-) 1440 WP_221272541.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  K6J74_RS01370 (NHP190012_02880) hemH 271587..272558 (+) 972 WP_221272146.1 ferrochelatase -
  K6J74_RS01375 (NHP190012_02890) - 272608..273237 (+) 630 WP_221272147.1 thioredoxin fold domain-containing protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30038.67 Da        Isoelectric Point: 9.1192

>NTDB_id=88594 K6J74_RS01360 WP_260321632.1 269250..270041(+) (comB8) [Helicobacter sp. NHP19-012]
MAHFEPGMENSNDPLKDEIVAELWARLQAEQAKFEKDLTSKIESLAVQNLDLNSVFQVQRRNTTIAYRLVVLLSFISLAL
VVALIILLPLKKTEHHFIDFANQDKHYAIIQKADGNLASNEALVRSLVGQYVLDRESINRIDDKERYEVVRLQSEAQVWQ
IFENLVASKNSIYTAQQLTRDIHIINISLLKQSKEQNIAQVQIVAKLFRAGNPLSEKRYNIVLSFAFKPLPAFDTAMMPK
NPTGFQVTRYSVTEMQNLKALKP

Nucleotide


Download         Length: 792 bp        

>NTDB_id=88594 K6J74_RS01360 WP_260321632.1 269250..270041(+) (comB8) [Helicobacter sp. NHP19-012]
TTGGCACACTTCGAGCCGGGCATGGAGAATAGCAACGACCCCTTAAAAGATGAGATTGTCGCCGAATTGTGGGCGAGACT
GCAGGCCGAGCAGGCTAAGTTTGAAAAGGACTTGACAAGCAAGATCGAAAGCTTGGCAGTGCAGAACTTGGACTTAAACA
GCGTTTTTCAAGTGCAAAGGCGCAACACCACCATCGCCTACCGCTTGGTGGTCTTGCTTAGCTTCATCAGTTTAGCGTTG
GTTGTGGCGTTGATCATTTTGCTACCCCTAAAAAAAACCGAACACCACTTCATAGACTTTGCTAACCAAGACAAGCACTA
CGCCATCATCCAAAAAGCAGACGGCAATTTGGCAAGCAATGAGGCTTTGGTGCGCTCCTTGGTGGGGCAGTATGTGCTGG
ATAGAGAATCCATTAATCGCATTGATGATAAAGAACGCTATGAGGTGGTGCGCCTACAAAGCGAGGCGCAGGTGTGGCAG
ATTTTTGAAAACTTGGTGGCCTCTAAAAACAGCATTTACACCGCCCAACAGCTCACAAGGGACATCCACATCATTAACAT
TTCGCTGCTCAAGCAGAGCAAAGAGCAAAACATCGCCCAAGTGCAAATCGTGGCAAAACTCTTTAGAGCGGGCAACCCCT
TAAGCGAGAAACGCTACAACATTGTATTGAGTTTTGCCTTCAAGCCCCTACCTGCCTTTGACACCGCCATGATGCCTAAA
AACCCCACGGGTTTTCAGGTTACCCGCTACAGCGTTACCGAAATGCAAAATCTCAAGGCTCTAAAGCCCTAA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(58-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

57.919

84.03

0.487

Multiple sequence alignment