Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   K6J72_RS06070 Genome accession   NZ_AP024814
Coordinates   1180515..1180781 (-) Length   88 a.a.
NCBI ID   WP_260320542.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1175515..1185781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J72_RS06050 (NHP190003_12160) - 1175808..1178114 (-) 2307 WP_221279208.1 TonB-dependent receptor family protein -
  K6J72_RS06055 (NHP190003_12170) - 1178289..1178993 (+) 705 WP_221279209.1 outer membrane beta-barrel protein -
  K6J72_RS06060 (NHP190003_12180) fliW 1179041..1179445 (+) 405 WP_221279210.1 flagellar assembly protein FliW -
  K6J72_RS06065 (NHP190003_12190) murG 1179451..1180524 (+) 1074 WP_221279211.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  K6J72_RS06070 (NHP190003_12200) comB3 1180515..1180781 (-) 267 WP_260320542.1 competence protein ComB Machinery gene
  K6J72_RS06075 (NHP190003_12210) comB2 1180781..1181065 (-) 285 WP_221279213.1 TrbC/VirB2 family protein Machinery gene
  K6J72_RS06080 (NHP190003_12220) - 1181313..1182113 (+) 801 WP_221279214.1 HrcA family transcriptional regulator -
  K6J72_RS06085 (NHP190003_12230) grpE 1182128..1182697 (+) 570 WP_260320543.1 nucleotide exchange factor GrpE -
  K6J72_RS06090 (NHP190003_12240) dnaK 1182719..1184581 (+) 1863 WP_221279216.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9791.54 Da        Isoelectric Point: 4.3991

>NTDB_id=88589 K6J72_RS06070 WP_260320542.1 1180515..1180781(-) (comB3) [Helicobacter sp. NHP19-003]
MDAPLLVVSVPNLQAISTKDKFLWLNAKSWIVSVFVPFVLWPWLGTLWALALYGGFLALFSVLEFFDEDIADILIAHSKL
TGAASFYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=88589 K6J72_RS06070 WP_260320542.1 1180515..1180781(-) (comB3) [Helicobacter sp. NHP19-003]
GTGGATGCCCCTTTATTGGTGGTGTCTGTGCCCAATTTACAAGCCATCTCCACAAAGGATAAATTCTTGTGGCTCAACGC
CAAGTCGTGGATTGTGTCGGTCTTTGTGCCCTTTGTGCTGTGGCCGTGGCTGGGTACGCTGTGGGCTTTGGCGTTGTATG
GGGGTTTTTTAGCCCTTTTTAGCGTGCTGGAGTTCTTTGATGAGGACATCGCAGACATCCTCATCGCCCACTCCAAACTC
ACGGGGGCGGCAAGTTTTTACGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

62.651

94.318

0.591

Multiple sequence alignment