Detailed information NTG0088586

Bioinformatically predicted

Overview

• Name: comB8
• Type: Machinery gene
• Locus tag: K6J72_RS04360
• Genome accession: NZ_AP024814
• Coordinates: 825603..826394 (-)
• Length: 263 a.a.
• NCBI ID: WP_260320493.1
• Uniprot ID: -
• Organism: Helicobacter sp. NHP19-003
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 820603..831394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6J72_RS04345 (NHP190003_08840)	-	822446..823075 (-)	630	WP_221278935.1	thioredoxin fold domain-containing protein	-
K6J72_RS04350 (NHP190003_08850)	hemH	823123..824094 (-)	972	WP_221278936.1	ferrochelatase	-
K6J72_RS04355 (NHP190003_08860)	gatB	824168..825601 (+)	1434	WP_221278937.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	-
K6J72_RS04360 (NHP190003_08870)	comB8	825603..826394 (-)	792	WP_260320493.1	VirB8/TrbF family protein	Machinery gene
K6J72_RS04365 (NHP190003_08880)	-	826363..826839 (-)	477	WP_260320494.1	pirin-like C-terminal cupin domain-containing protein	-
K6J72_RS04370 (NHP190003_08890)	prpD	826898..828319 (-)	1422	WP_260320495.1	2-methylcitrate dehydratase	-
K6J72_RS04375 (NHP190003_08900)	-	828350..829003 (-)	654	WP_221278939.1	YggS family pyridoxal phosphate-dependent enzyme	-
K6J72_RS04380 (NHP190003_08910)	-	828993..830825 (-)	1833	WP_221278940.1	menaquinone biosynthesis decarboxylase	-

Sequence

Protein

• Length: 263 a.a.
• Molecular weight: 30162.98 Da
• Isoelectric Point: 9.4288

>NTDB_id=88586 K6J72_RS04360 WP_260320493.1 825603..826394(-) (comB8) [Helicobacter sp. NHP19-003]
MAHFERGMANNNDLLKDEIIAELWAKLQAEQAKFEKDMASKIESLAVQNLDLNSVFRIERRNTTIAYRLVVLLSFISLAL
VVALMILLPLKKTEHHFIDFANQDKHYAIIQKADGNLASNEALVRSLVGQYVLDRESINRIDDKERYEVVRLQSEAQVWQ
VFENLVASKNSIYTAQQLTRDIHIINISLLKQSKEQNIAQVQIVAKLFRAGSLLTEKRYNIVLSFAFKPLPAFDTAMMPK
NPTGFEVIRYSVTEMQNLKNLKP

Nucleotide

• Length: 792 bp

>NTDB_id=88586 K6J72_RS04360 WP_260320493.1 825603..826394(-) (comB8) [Helicobacter sp. NHP19-003]
TTGGCACACTTCGAGCGGGGCATGGCAAATAACAACGACCTCCTAAAAGACGAGATTATCGCCGAGTTGTGGGCGAAACT
GCAGGCAGAGCAGGCCAAGTTTGAAAAAGACATGGCAAGCAAGATCGAAAGCTTGGCGGTGCAGAACTTGGACTTAAACA
GCGTTTTTAGAATTGAAAGGCGCAACACCACCATCGCCTACCGCTTAGTGGTACTGCTAAGCTTCATCAGTTTGGCGTTG
GTTGTGGCATTGATGATTCTCTTGCCCCTAAAGAAAACCGAACACCACTTCATAGACTTTGCCAACCAAGACAAGCACTA
CGCCATCATCCAAAAGGCAGATGGCAATTTGGCAAGCAACGAAGCCTTAGTGCGTTCTTTAGTGGGGCAGTATGTGCTCG
ATAGAGAGTCGATTAACCGCATAGACGATAAGGAGCGCTATGAAGTCGTGCGTTTGCAAAGCGAGGCGCAGGTGTGGCAG
GTTTTTGAAAACTTGGTGGCCTCCAAAAACAGCATTTACACTGCCCAACAGCTCACAAGGGACATCCACATCATCAACAT
CTCTTTACTCAAGCAAAGCAAGGAGCAAAACATCGCCCAAGTGCAGATCGTGGCAAAGCTCTTTAGGGCGGGCAGTCTCT
TGACAGAGAAACGCTATAATATTGTGTTGAGCTTTGCCTTCAAGCCCCTGCCCGCCTTTGACACCGCCATGATGCCCAAA
AACCCCACGGGCTTTGAAGTGATCCGCTACAGCGTAACCGAAATGCAAAACCTCAAAAACCTAAAACCCTAG

Domains

Predicted by InterproScan.

• VirB8 protein (VirB8) (60-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB8	Helicobacter pylori P1	57.919	84.03	0.487