Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BIV16_RS07350 Genome accession   NZ_CP135162
Coordinates   1550267..1552126 (-) Length   619 a.a.
NCBI ID   WP_075678462.1    Uniprot ID   -
Organism   Roseburia sp. 831b     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545267..1557126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIV16_RS07325 (BIV16_07365) araD 1546314..1546838 (-) 525 Protein_1445 L-ribulose-5-phosphate 4-epimerase AraD -
  BIV16_RS07330 (BIV16_07370) - 1547122..1547469 (-) 348 Protein_1446 transaldolase family protein -
  BIV16_RS07335 (BIV16_07375) - 1547499..1548777 (-) 1279 Protein_1447 FGGY-family carbohydrate kinase -
  BIV16_RS07345 (BIV16_07380) - 1548907..1550031 (-) 1125 WP_075678463.1 DUF4422 domain-containing protein -
  BIV16_RS07350 (BIV16_07385) rcrQ 1550267..1552126 (-) 1860 WP_075678462.1 ABC transporter ATP-binding protein Regulator
  BIV16_RS07355 (BIV16_07390) - 1552119..1554269 (-) 2151 WP_075678461.1 ABC transporter ATP-binding protein -
  BIV16_RS07360 (BIV16_07395) - 1554300..1554791 (-) 492 WP_159435893.1 MarR family transcriptional regulator -
  BIV16_RS07365 (BIV16_07400) - 1554921..1555739 (-) 819 WP_075678960.1 shikimate kinase -
  BIV16_RS07370 (BIV16_07405) - 1556006..1557055 (-) 1050 WP_083624999.1 TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68565.45 Da        Isoelectric Point: 6.8290

>NTDB_id=885772 BIV16_RS07350 WP_075678462.1 1550267..1552126(-) (rcrQ) [Roseburia sp. 831b]
MSNETNHTQNKQRRPMRGPGRGMMPGKKPKNLKAAIGKLSSYIGAYKIGIIVVVLFAACSTVFNVIGPKILGKATTSLSE
GLMAKIAGTGGIDFNHIGKILIFVLCLYAGSAIFSFIQGWIMTGITQKVCYQLRKEISEKINRMPMRYFESRTYGEVLSR
ITNDVDTLGQGLNQSITTIITSVATLIGVFIMMLSISPLMTLIALVILPISAVLVSFVVKKSQKYFKSQQEYLGHINGQV
EEVYGGHMVIKVFNKEKAVVDEFEKTNEILFDSAWKSQFLSGMMMPIMTFVGNLGYAAVALTGGLLVIRNVIQIGDIQAF
IQYVKNFTQPIQQIAQVINQVQSMAAASERVFEFLEEEEEDQIVENPVRLAEIKGEVEFEHVHFGYHEDQTIINDFSASV
KPGQKIAIVGPTGAGKTTMVKLLMRFYDVNSGAILVDGHNVKDFNRRELRDAFGMVLQDTWLFKGTIMENIRYGRLDATD
EEVIAAAKAAHADHFIKTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNKILILDEATSSVDTRTEIAIQKAMDHLM
KGRTSFVIAHRLSTIRDADLILVMKDGDIVEQGNHETLLAQNGFYAGLYNSQFEDAIAE

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=885772 BIV16_RS07350 WP_075678462.1 1550267..1552126(-) (rcrQ) [Roseburia sp. 831b]
ATGAGTAACGAGACAAATCATACACAAAATAAACAGCGCAGACCGATGAGAGGGCCGGGCAGAGGCATGATGCCGGGTAA
AAAACCAAAGAATTTAAAGGCTGCCATCGGAAAATTATCTTCTTATATCGGAGCTTACAAAATTGGAATTATTGTGGTTG
TTTTATTTGCAGCCTGCTCCACGGTATTTAATGTTATTGGGCCAAAGATTTTAGGAAAAGCAACGACATCCTTGTCAGAG
GGACTGATGGCTAAGATTGCGGGAACAGGAGGCATCGATTTTAATCATATCGGAAAAATCCTGATTTTTGTACTTTGCCT
GTATGCAGGAAGTGCCATCTTTAGTTTCATTCAAGGATGGATTATGACAGGAATTACACAGAAGGTATGTTACCAGCTGC
GTAAAGAAATTTCAGAGAAAATCAACCGTATGCCGATGCGCTATTTTGAAAGCCGCACATATGGTGAAGTGTTATCCCGT
ATCACCAATGATGTCGATACGTTAGGTCAGGGCTTAAACCAGAGTATTACAACGATTATTACCTCGGTTGCCACCTTGAT
TGGTGTCTTTATCATGATGCTTAGCATTTCGCCGCTTATGACACTGATTGCGCTTGTAATTCTACCAATCTCAGCAGTGC
TTGTCTCTTTTGTGGTAAAAAAATCACAGAAGTATTTTAAGTCCCAGCAGGAGTACTTAGGACATATCAACGGTCAGGTC
GAAGAAGTTTACGGCGGTCATATGGTCATCAAAGTATTTAATAAAGAAAAAGCCGTTGTAGACGAATTTGAAAAGACCAA
TGAAATCTTGTTTGATTCCGCATGGAAGTCACAGTTTTTGTCTGGAATGATGATGCCAATCATGACATTTGTCGGCAACT
TAGGATATGCAGCAGTTGCGTTGACAGGTGGCTTGCTCGTCATTCGAAATGTGATTCAGATTGGTGATATTCAGGCATTC
ATCCAGTATGTGAAAAATTTCACACAGCCAATTCAGCAGATTGCACAGGTTATCAATCAGGTACAGTCCATGGCTGCAGC
CTCCGAGCGTGTCTTTGAATTCTTAGAGGAAGAGGAAGAAGACCAGATTGTTGAGAATCCGGTTCGCTTAGCAGAAATCA
AAGGCGAAGTGGAATTTGAACACGTTCACTTTGGATATCATGAAGATCAGACGATTATAAATGATTTTAGCGCCAGCGTA
AAACCTGGACAAAAGATTGCAATTGTAGGTCCGACCGGAGCCGGAAAGACGACAATGGTAAAACTTCTGATGCGTTTTTA
TGATGTAAACAGTGGAGCAATCCTTGTAGACGGTCATAATGTAAAAGACTTTAACCGGCGTGAACTTCGGGATGCGTTCG
GCATGGTTCTCCAGGATACCTGGCTGTTTAAAGGAACTATTATGGAAAACATCCGTTATGGACGGTTAGATGCGACCGAT
GAAGAGGTCATTGCAGCAGCAAAAGCAGCACATGCAGATCACTTCATCAAGACATTGCCGGGTGGATATCAGATGGAATT
AAACGAGGATGCAAGCAATGTCTCCCAGGGTCAAAAACAGCTGCTTACGATTGCACGTGCAATCTTAGCAGATAATAAGA
TTCTGATTCTTGACGAGGCAACATCATCGGTTGATACCAGAACAGAAATTGCAATTCAAAAGGCGATGGATCACTTGATG
AAAGGACGAACCAGCTTCGTTATCGCACACAGACTTTCTACCATTCGTGATGCGGATTTGATTCTTGTCATGAAAGACGG
TGATATCGTCGAGCAGGGAAATCATGAAACGCTGCTTGCACAGAATGGATTTTATGCAGGACTTTACAATTCACAGTTTG
AAGATGCGATTGCAGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(50-330)

ABC transporter (ABC_tran)

(394-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.195

94.669

0.485