Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RQL82_RS01670 Genome accession   NZ_CP135159
Coordinates   355252..355677 (+) Length   141 a.a.
NCBI ID   WP_005078455.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AR3651     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350252..360677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL82_RS01660 (RQL82_01665) pilY1 350908..354762 (+) 3855 WP_329760176.1 PilC/PilY family type IV pilus protein Machinery gene
  RQL82_RS01665 (RQL82_01670) pilY2 354773..355255 (+) 483 WP_284090631.1 type IV pilin protein Machinery gene
  RQL82_RS01670 (RQL82_01675) pilE 355252..355677 (+) 426 WP_005078455.1 type IV pilin protein Machinery gene
  RQL82_RS01675 (RQL82_01680) rpsP 355825..356076 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RQL82_RS01680 (RQL82_01685) rimM 356096..356644 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  RQL82_RS01685 (RQL82_01690) trmD 356687..357442 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RQL82_RS01690 (RQL82_01695) rplS 357662..358030 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  RQL82_RS01695 (RQL82_01700) lip 358083..359024 (-) 942 WP_080591800.1 lipase family alpha/beta hydrolase -
  RQL82_RS01700 (RQL82_01705) - 359140..360174 (-) 1035 WP_033848859.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15186.35 Da        Isoelectric Point: 7.1292

>NTDB_id=885730 RQL82_RS01670 WP_005078455.1 355252..355677(+) (pilE) [Acinetobacter pittii strain AR3651]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLEAEKIVHNRYPSNATITSIYGSSVSPQQG
QALYNLAFSSITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=885730 RQL82_RS01670 WP_005078455.1 355252..355677(+) (pilE) [Acinetobacter pittii strain AR3651]
ATGAAGAATGGTTTTACCTTAATAGAACTCATGATTGTAGTAGCAATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
GTATTTGCAGTATTTACGCAAAGGACATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAAGCAG
AAAAAATAGTTCACAATCGTTATCCATCGAATGCGACGATTACTTCGATTTATGGGTCTAGTGTCAGCCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTTTCTAGCATAACTGATTCAAGCTGGGTGCTAACTGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.106

100

0.851
  comF Acinetobacter baylyi ADP1

50.714

99.291

0.504