Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RNZ43_RS08670 Genome accession   NZ_CP135143
Coordinates   1679867..1680646 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain L33a     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1674867..1685646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS08650 trmFO 1675554..1676861 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RNZ43_RS08655 xerC 1676931..1677848 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  RNZ43_RS08660 hslV 1677864..1678409 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  RNZ43_RS08665 hslU 1678426..1679829 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  RNZ43_RS08670 codY 1679867..1680646 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RNZ43_RS08675 flgB 1681000..1681389 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  RNZ43_RS08680 flgC 1681389..1681841 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  RNZ43_RS08685 fliE 1681852..1682172 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  RNZ43_RS08690 fliF 1682215..1683825 (+) 1611 WP_416406315.1 flagellar basal-body MS-ring/collar protein FliF -
  RNZ43_RS08695 fliG 1683838..1684854 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  RNZ43_RS08700 fliH 1684847..1685602 (+) 756 WP_094246938.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=885586 RNZ43_RS08670 WP_003154263.1 1679867..1680646(+) (codY) [Bacillus velezensis strain L33a]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=885586 RNZ43_RS08670 WP_003154263.1 1679867..1680646(+) (codY) [Bacillus velezensis strain L33a]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGGATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471