Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RMP65_RS06425 Genome accession   NZ_CP135089
Coordinates   1304084..1304923 (-) Length   279 a.a.
NCBI ID   WP_313681019.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1299084..1309923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS06410 (RMP65_06410) uidA 1299446..1301245 (-) 1800 WP_313681017.1 beta-glucuronidase -
  RMP65_RS06415 (RMP65_06415) - 1301261..1302289 (-) 1029 WP_313681018.1 sugar kinase -
  RMP65_RS06420 (RMP65_06420) - 1302344..1303897 (-) 1554 WP_172030052.1 MFS transporter -
  RMP65_RS06425 (RMP65_06425) endA 1304084..1304923 (-) 840 WP_313681019.1 DNA/RNA non-specific endonuclease Machinery gene
  RMP65_RS06430 (RMP65_06430) - 1304953..1305144 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  RMP65_RS06435 (RMP65_06435) murA 1305137..1306420 (-) 1284 WP_313681020.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RMP65_RS06440 (RMP65_06440) - 1306444..1306668 (-) 225 WP_012775178.1 DUF1146 family protein -
  RMP65_RS06445 (RMP65_06445) - 1306728..1307144 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  RMP65_RS06450 (RMP65_06450) atpD 1307154..1308560 (-) 1407 WP_024407431.1 F0F1 ATP synthase subunit beta -
  RMP65_RS06455 (RMP65_06455) - 1308580..1309458 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30092.22 Da        Isoelectric Point: 5.9494

>NTDB_id=884932 RMP65_RS06425 WP_313681019.1 1304084..1304923(-) (endA) [Streptococcus suis strain ID34567]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNAADYSYYVNQSKASEGTPSQELAGSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQVHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEITVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=884932 RMP65_RS06425 WP_313681019.1 1304084..1304923(-) (endA) [Streptococcus suis strain ID34567]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTGGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGCTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTGGTTCGGTATTGACAGAAGATGTAAAAAAACAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCACCAGGTCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAATGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTT
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGCTTGAG
TATTAATTATCATAGTGGTGAAATCACGGTGAATGAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.763

84.588

0.599
  endA Streptococcus pneumoniae D39

70.763

84.588

0.599
  endA Streptococcus pneumoniae R6

70.763

84.588

0.599
  endA Streptococcus pneumoniae TIGR4

70.763

84.588

0.599