Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RMP67_RS07600 Genome accession   NZ_CP135087
Coordinates   1540023..1540862 (-) Length   279 a.a.
NCBI ID   WP_313919288.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1535023..1545862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS07585 (RMP67_07585) uidA 1535384..1537183 (-) 1800 WP_313919285.1 beta-glucuronidase -
  RMP67_RS07590 (RMP67_07590) - 1537199..1538227 (-) 1029 WP_024382350.1 sugar kinase -
  RMP67_RS07595 (RMP67_07595) - 1538283..1539836 (-) 1554 WP_024382349.1 MFS transporter -
  RMP67_RS07600 (RMP67_07600) endA 1540023..1540862 (-) 840 WP_313919288.1 DNA/RNA non-specific endonuclease Machinery gene
  RMP67_RS07605 (RMP67_07605) - 1540892..1541083 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  RMP67_RS07610 (RMP67_07610) murA 1541076..1542359 (-) 1284 WP_024413088.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RMP67_RS07615 (RMP67_07615) - 1542384..1542608 (-) 225 WP_012775178.1 DUF1146 family protein -
  RMP67_RS07620 (RMP67_07620) - 1542668..1543084 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  RMP67_RS07625 (RMP67_07625) atpD 1543094..1544500 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  RMP67_RS07630 (RMP67_07630) - 1544520..1545398 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30177.37 Da        Isoelectric Point: 6.2377

>NTDB_id=884879 RMP67_RS07600 WP_313919288.1 1540023..1540862(-) (endA) [Streptococcus suis strain ID26102]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANEQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=884879 RMP67_RS07600 WP_313919288.1 1540023..1540862(-) (endA) [Streptococcus suis strain ID26102]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGAAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGTTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGAACAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.339

84.588

0.595
  endA Streptococcus pneumoniae D39

70.339

84.588

0.595
  endA Streptococcus pneumoniae R6

70.339

84.588

0.595
  endA Streptococcus pneumoniae TIGR4

70.339

84.588

0.595