Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RMQ62_RS09675 Genome accession   NZ_CP135065
Coordinates   2003494..2004333 (+) Length   279 a.a.
NCBI ID   WP_313681019.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1998494..2009333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS09645 (RMQ62_09645) - 1998959..1999837 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  RMQ62_RS09650 (RMQ62_09650) atpD 1999857..2001263 (+) 1407 WP_024407431.1 F0F1 ATP synthase subunit beta -
  RMQ62_RS09655 (RMQ62_09655) - 2001273..2001689 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  RMQ62_RS09660 (RMQ62_09660) - 2001749..2001973 (+) 225 WP_012775178.1 DUF1146 family protein -
  RMQ62_RS09665 (RMQ62_09665) murA 2001997..2003280 (+) 1284 WP_313681020.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RMQ62_RS09670 (RMQ62_09670) - 2003273..2003464 (+) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  RMQ62_RS09675 (RMQ62_09675) endA 2003494..2004333 (+) 840 WP_313681019.1 DNA/RNA non-specific endonuclease Machinery gene
  RMQ62_RS09680 (RMQ62_09680) - 2004520..2006073 (+) 1554 WP_172030052.1 MFS transporter -
  RMQ62_RS09685 (RMQ62_09685) - 2006128..2007156 (+) 1029 WP_313681018.1 sugar kinase -
  RMQ62_RS09690 (RMQ62_09690) uidA 2007172..2008971 (+) 1800 WP_313681017.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30092.22 Da        Isoelectric Point: 5.9494

>NTDB_id=884756 RMQ62_RS09675 WP_313681019.1 2003494..2004333(+) (endA) [Streptococcus suis strain ID24665]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNAADYSYYVNQSKASEGTPSQELAGSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQVHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEITVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=884756 RMQ62_RS09675 WP_313681019.1 2003494..2004333(+) (endA) [Streptococcus suis strain ID24665]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTGGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGCTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTGGTTCGGTATTGACAGAAGATGTAAAAAAACAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCACCAGGTCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAATGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTT
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGCTTGAG
TATTAATTATCATAGTGGTGAAATCACGGTGAATGAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.763

84.588

0.599
  endA Streptococcus pneumoniae D39

70.763

84.588

0.599
  endA Streptococcus pneumoniae R6

70.763

84.588

0.599
  endA Streptococcus pneumoniae TIGR4

70.763

84.588

0.599