Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | RPB93_RS08165 | Genome accession | NZ_CP135060 |
| Coordinates | 1558254..1559033 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421290.1 | Uniprot ID | A0A9W5VKA1 |
| Organism | Bacillus cereus strain B126_1 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1519412..1574478 | 1558254..1559033 | within | 0 |
Gene organization within MGE regions
Location: 1519412..1574478
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RPB93_RS07975 (RPB93_07975) | rsmB | 1519634..1520968 (+) | 1335 | WP_001249666.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| RPB93_RS07980 (RPB93_07980) | rlmN | 1520973..1522061 (+) | 1089 | WP_006928333.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| RPB93_RS07985 (RPB93_07985) | - | 1522066..1522818 (+) | 753 | WP_000648701.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| RPB93_RS07990 (RPB93_07990) | pknB | 1522827..1524800 (+) | 1974 | WP_000904748.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| RPB93_RS07995 (RPB93_07995) | rsgA | 1525047..1525928 (+) | 882 | WP_001113932.1 | ribosome small subunit-dependent GTPase A | - |
| RPB93_RS08000 (RPB93_08000) | rpe | 1525931..1526575 (+) | 645 | WP_000589974.1 | ribulose-phosphate 3-epimerase | - |
| RPB93_RS08005 (RPB93_08005) | - | 1526645..1527325 (+) | 681 | WP_313755385.1 | thiamine diphosphokinase | - |
| RPB93_RS08010 (RPB93_08010) | spoVM | 1527392..1527472 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| RPB93_RS08015 (RPB93_08015) | rpmB | 1527546..1527734 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| RPB93_RS08020 (RPB93_08020) | - | 1528111..1528473 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| RPB93_RS08025 (RPB93_08025) | - | 1528496..1530172 (+) | 1677 | WP_000027130.1 | DAK2 domain-containing protein | - |
| RPB93_RS08030 (RPB93_08030) | recG | 1530463..1532511 (+) | 2049 | WP_001000816.1 | ATP-dependent DNA helicase RecG | - |
| RPB93_RS08035 (RPB93_08035) | fapR | 1532600..1533193 (+) | 594 | WP_000747348.1 | transcription factor FapR | - |
| RPB93_RS08040 (RPB93_08040) | plsX | 1533190..1534182 (+) | 993 | WP_000684115.1 | phosphate acyltransferase PlsX | - |
| RPB93_RS08045 (RPB93_08045) | fabD | 1534197..1535141 (+) | 945 | WP_000515899.1 | ACP S-malonyltransferase | - |
| RPB93_RS08050 (RPB93_08050) | fabG | 1535141..1535881 (+) | 741 | WP_000911773.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| RPB93_RS08055 (RPB93_08055) | acpP | 1535951..1536184 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| RPB93_RS08060 (RPB93_08060) | rncS | 1536243..1536980 (+) | 738 | WP_001146875.1 | ribonuclease III | - |
| RPB93_RS08065 (RPB93_08065) | smc | 1537127..1540696 (+) | 3570 | WP_000478974.1 | chromosome segregation protein SMC | - |
| RPB93_RS08070 (RPB93_08070) | ftsY | 1540712..1541701 (+) | 990 | WP_000007655.1 | signal recognition particle-docking protein FtsY | - |
| RPB93_RS08075 (RPB93_08075) | - | 1541835..1542167 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| RPB93_RS08080 (RPB93_08080) | ffh | 1542180..1543529 (+) | 1350 | WP_000863460.1 | signal recognition particle protein | - |
| RPB93_RS08085 (RPB93_08085) | rpsP | 1543631..1543903 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| RPB93_RS08090 (RPB93_08090) | - | 1543918..1544145 (+) | 228 | WP_000737401.1 | KH domain-containing protein | - |
| RPB93_RS08095 (RPB93_08095) | rimM | 1544267..1544782 (+) | 516 | WP_000170278.1 | ribosome maturation factor RimM | - |
| RPB93_RS08100 (RPB93_08100) | trmD | 1544782..1545516 (+) | 735 | WP_000686903.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| RPB93_RS08105 (RPB93_08105) | rplS | 1545663..1546007 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| RPB93_RS08110 (RPB93_08110) | lepB | 1546109..1546660 (+) | 552 | WP_000711853.1 | signal peptidase I | - |
| RPB93_RS08115 (RPB93_08115) | ylqF | 1546681..1547571 (+) | 891 | WP_000236704.1 | ribosome biogenesis GTPase YlqF | - |
| RPB93_RS08120 (RPB93_08120) | - | 1547628..1548401 (+) | 774 | WP_001194265.1 | ribonuclease HII | - |
| RPB93_RS08125 (RPB93_08125) | sucC | 1548596..1549756 (+) | 1161 | WP_001020791.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| RPB93_RS08130 (RPB93_08130) | sucD | 1549776..1550678 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| RPB93_RS08135 (RPB93_08135) | dprA | 1550767..1551636 (+) | 870 | WP_000818043.1 | DNA-processing protein DprA | - |
| RPB93_RS08140 (RPB93_08140) | topA | 1551781..1553859 (+) | 2079 | WP_001286963.1 | type I DNA topoisomerase | - |
| RPB93_RS08145 (RPB93_08145) | trmFO | 1553908..1555212 (+) | 1305 | WP_000213002.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| RPB93_RS08150 (RPB93_08150) | xerC | 1555278..1556177 (+) | 900 | WP_001101243.1 | tyrosine recombinase XerC | - |
| RPB93_RS08155 (RPB93_08155) | hslV | 1556220..1556762 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| RPB93_RS08160 (RPB93_08160) | hslU | 1556785..1558176 (+) | 1392 | WP_000550078.1 | ATP-dependent protease ATPase subunit HslU | - |
| RPB93_RS08165 (RPB93_08165) | codY | 1558254..1559033 (+) | 780 | WP_000421290.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| RPB93_RS08170 (RPB93_08170) | rpsB | 1559381..1560082 (+) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| RPB93_RS08175 (RPB93_08175) | tsf | 1560186..1561073 (+) | 888 | WP_001018578.1 | translation elongation factor Ts | - |
| RPB93_RS08180 (RPB93_08180) | pyrH | 1561140..1561862 (+) | 723 | WP_000042668.1 | UMP kinase | - |
| RPB93_RS08185 (RPB93_08185) | frr | 1561865..1562422 (+) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| RPB93_RS08190 (RPB93_08190) | uppS | 1562508..1563284 (+) | 777 | WP_000971296.1 | isoprenyl transferase | - |
| RPB93_RS08195 (RPB93_08195) | cdsA | 1563302..1564093 (+) | 792 | WP_000813594.1 | phosphatidate cytidylyltransferase | - |
| RPB93_RS08200 (RPB93_08200) | dxr | 1564117..1565259 (+) | 1143 | WP_000790373.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| RPB93_RS08205 (RPB93_08205) | rseP | 1565277..1566533 (+) | 1257 | WP_001090243.1 | RIP metalloprotease RseP | - |
| RPB93_RS08210 (RPB93_08210) | - | 1566643..1568343 (+) | 1701 | WP_000814309.1 | proline--tRNA ligase | - |
| RPB93_RS08215 (RPB93_08215) | - | 1568468..1572769 (+) | 4302 | WP_000060005.1 | PolC-type DNA polymerase III | - |
| RPB93_RS08220 (RPB93_08220) | rimP | 1573106..1573576 (+) | 471 | WP_000359096.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28793.05 Da Isoelectric Point: 4.7165
>NTDB_id=884623 RPB93_RS08165 WP_000421290.1 1558254..1559033(+) (codY) [Bacillus cereus strain B126_1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=884623 RPB93_RS08165 WP_000421290.1 1558254..1559033(+) (codY) [Bacillus cereus strain B126_1]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.467 |
100 |
0.815 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |