Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJT19_RS01895 Genome accession   NZ_CP135003
Coordinates   389927..390460 (-) Length   177 a.a.
NCBI ID   WP_075472919.1    Uniprot ID   A0A160SW65
Organism   Buchnera aphidicola (Tuberolachnus salignus) strain Tubsa08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 384927..395460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT19_RS01865 (RJT19_01865) rpe 385606..386274 (-) 669 WP_075472908.1 ribulose-phosphate 3-epimerase -
  RJT19_RS01870 (RJT19_01870) aroB 386320..387420 (-) 1101 WP_075472910.1 3-dehydroquinate synthase -
  RJT19_RS01875 (RJT19_01875) aroK 387451..387987 (-) 537 WP_075472912.1 shikimate kinase AroK -
  RJT19_RS01885 (RJT19_01885) - 388354..388935 (-) 582 WP_075472914.1 NifU family protein -
  RJT19_RS01890 (RJT19_01890) - 389093..389869 (+) 777 WP_075472916.1 alpha/beta fold hydrolase -
  RJT19_RS01895 (RJT19_01895) ssb 389927..390460 (-) 534 WP_075472919.1 single-stranded DNA-binding protein Machinery gene
  RJT19_RS01900 (RJT19_01900) dusA 390665..391666 (+) 1002 WP_343187986.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJT19_RS01905 (RJT19_01905) dnaB 391746..393128 (+) 1383 WP_075472923.1 replicative DNA helicase -
  RJT19_RS01910 (RJT19_01910) ruvX 393163..393591 (+) 429 WP_075472925.1 Holliday junction resolvase RuvX -
  RJT19_RS01915 (RJT19_01915) - 393677..394801 (+) 1125 WP_075472927.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 20089.61 Da        Isoelectric Point: 7.2025

>NTDB_id=884455 RJT19_RS01895 WP_075472919.1 389927..390460(-) (ssb) [Buchnera aphidicola (Tuberolachnus salignus) strain Tubsa08]
MASRGINKVILIGNLGQDPEIRYMPNGGAVLNMTLATSDTWKDKKTGEAKEKTEWHRLVVFGKLAEIAAQYLHKGSQIYI
EGSLQTRKWQDQNGIDRYITEVIVNITGTMQMLGNRNSNQNISRDSLGTKYSSSISEKKNKIQDENYSLKNSDEELKKQD
NLINSTTKLDFEDEIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=884455 RJT19_RS01895 WP_075472919.1 389927..390460(-) (ssb) [Buchnera aphidicola (Tuberolachnus salignus) strain Tubsa08]
ATGGCAAGTCGTGGAATTAATAAAGTAATTTTAATTGGAAATTTAGGACAAGATCCTGAAATTAGATATATGCCTAATGG
AGGCGCTGTGTTAAATATGACTTTAGCAACTTCAGATACTTGGAAAGATAAAAAGACTGGAGAAGCTAAAGAAAAAACAG
AATGGCATCGGCTTGTAGTATTTGGTAAATTAGCAGAAATTGCGGCACAATATTTACATAAAGGATCGCAAATTTATATT
GAAGGATCTTTGCAAACTCGTAAATGGCAAGATCAAAATGGAATTGATCGTTATATTACAGAAGTAATTGTTAATATTAC
CGGAACTATGCAAATGTTAGGAAATAGAAATTCTAATCAAAATATTTCTCGAGATTCTTTAGGTACAAAATATTCTTCTT
CAATTTCAGAAAAAAAAAATAAAATTCAAGATGAAAATTATTCTTTAAAAAATTCAGATGAAGAATTAAAAAAACAAGAC
AATTTAATTAATTCAACTACTAAATTAGATTTTGAAGATGAAATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160SW65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.073

100

0.537
  ssb Glaesserella parasuis strain SC1401

43.407

100

0.446
  ssb Neisseria gonorrhoeae MS11

40.113

100

0.401
  ssb Neisseria meningitidis MC58

40.113

100

0.401