Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJT18_RS01875 Genome accession   NZ_CP135000
Coordinates   378312..378836 (-) Length   174 a.a.
NCBI ID   WP_343154749.1    Uniprot ID   -
Organism   Buchnera aphidicola (Pseudoregma panicola) strain Psepa07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 373312..383836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT18_RS01845 (RJT18_01845) rpe 374055..374729 (-) 675 WP_343154744.1 ribulose-phosphate 3-epimerase -
  RJT18_RS01850 (RJT18_01850) aroB 374763..375851 (-) 1089 WP_343154745.1 3-dehydroquinate synthase -
  RJT18_RS01855 (RJT18_01855) aroK 375886..376419 (-) 534 WP_343154746.1 shikimate kinase AroK -
  RJT18_RS01865 (RJT18_01865) - 376859..377149 (-) 291 WP_343154747.1 NifU family protein -
  RJT18_RS01870 (RJT18_01870) - 377514..378239 (+) 726 WP_343154748.1 hypothetical protein -
  RJT18_RS01875 (RJT18_01875) ssb 378312..378836 (-) 525 WP_343154749.1 single-stranded DNA-binding protein Machinery gene
  RJT18_RS01880 (RJT18_01880) dusA 378998..379981 (+) 984 WP_343154750.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJT18_RS01885 (RJT18_01885) dnaB 380046..381440 (+) 1395 WP_343154751.1 replicative DNA helicase -
  RJT18_RS01890 (RJT18_01890) gshB 381553..382536 (+) 984 WP_343154752.1 glutathione synthase -
  RJT18_RS01895 (RJT18_01895) - 382533..383099 (+) 567 WP_343154753.1 YqgE/AlgH family protein -
  RJT18_RS01900 (RJT18_01900) ruvX 383103..383522 (+) 420 WP_343154754.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 20028.45 Da        Isoelectric Point: 8.3571

>NTDB_id=884450 RJT18_RS01875 WP_343154749.1 378312..378836(-) (ssb) [Buchnera aphidicola (Pseudoregma panicola) strain Psepa07]
MASRGINKVILIGHLGQDPEVRYMTNGVAVANMNIATSEIWKDKNTGETREKTEWHRIVLFNKLAEIAREYLRKGSQVYI
EGSLQTRKWQDQNNIDRYTTEVVVNIGGTMQMLGTRNSNSVKSSTKENSDLKNSDSKKQNILKKNDIKENENYSKKDILL
NERNDSEFDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=884450 RJT18_RS01875 WP_343154749.1 378312..378836(-) (ssb) [Buchnera aphidicola (Pseudoregma panicola) strain Psepa07]
ATGGCTAGTAGGGGAATAAATAAAGTAATATTAATAGGTCATTTAGGTCAAGATCCTGAAGTAAGATATATGACAAATGG
AGTAGCGGTTGCTAATATGAATATTGCTACTTCTGAAATATGGAAAGATAAAAATACTGGTGAAACAAGAGAAAAAACAG
AATGGCACAGAATTGTTCTGTTTAATAAATTAGCAGAAATAGCAAGAGAATATTTAAGAAAAGGCTCTCAAGTTTATATA
GAAGGATCTTTGCAAACTAGAAAGTGGCAAGATCAAAATAATATAGATAGGTATACCACTGAAGTTGTTGTAAATATAGG
AGGTACTATGCAAATGTTAGGAACAAGAAATAGTAACTCTGTTAAATCTTCAACAAAAGAAAATTCTGATTTAAAAAATT
CAGATTCTAAAAAACAAAATATTTTAAAAAAAAATGATATTAAAGAAAATGAAAATTATTCTAAAAAAGATATTTTGTTA
AATGAAAGAAATGATTCAGAATTTGATGATGAAATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.667

100

0.586
  ssb Glaesserella parasuis strain SC1401

47.253

100

0.494
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.42
  ssb Neisseria meningitidis MC58

40.909

100

0.414