Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJI84_RS01870 Genome accession   NZ_CP134991
Coordinates   384586..385110 (-) Length   174 a.a.
NCBI ID   WP_343189056.1    Uniprot ID   -
Organism   Buchnera aphidicola (Chaitoregma tattakana) strain Chata04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 379586..390110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJI84_RS01845 (RJI84_01845) rpe 380569..381243 (-) 675 WP_343189052.1 ribulose-phosphate 3-epimerase -
  RJI84_RS01850 (RJI84_01850) aroB 381256..382368 (-) 1113 WP_343189053.1 3-dehydroquinate synthase -
  RJI84_RS01855 (RJI84_01855) aroK 382400..382933 (-) 534 WP_343189054.1 shikimate kinase AroK -
  RJI84_RS01865 (RJI84_01865) - 383343..383681 (-) 339 WP_343189055.1 NifU family protein -
  RJI84_RS01870 (RJI84_01870) ssb 384586..385110 (-) 525 WP_343189056.1 single-stranded DNA-binding protein Machinery gene
  RJI84_RS01875 (RJI84_01875) dusA 385273..386280 (+) 1008 WP_343189057.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJI84_RS01880 (RJI84_01880) dnaB 386406..387800 (+) 1395 WP_343189058.1 replicative DNA helicase -
  RJI84_RS01885 (RJI84_01885) gshB 387916..388872 (+) 957 WP_343189059.1 glutathione synthase -
  RJI84_RS01890 (RJI84_01890) - 388916..389476 (+) 561 WP_343189272.1 YqgE/AlgH family protein -
  RJI84_RS01895 (RJI84_01895) ruvX 389480..389893 (+) 414 WP_343189060.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19974.49 Da        Isoelectric Point: 8.3627

>NTDB_id=884436 RJI84_RS01870 WP_343189056.1 384586..385110(-) (ssb) [Buchnera aphidicola (Chaitoregma tattakana) strain Chata04]
MASRGVNKVILIGNLGQDPEVRYMTNGVAVANMNIATSETWKDKNTGEIREKTEWHRIVLFNKLAEIAREYLKKGAQVYI
EGSLQTRKWQDQNNIDRYTTEIVVNIGGTMHMLGNRNSNVSNNIRKEEISSPNLTKQNKDNLNIIKKDGKDSYSKKDILL
NERNESEFDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=884436 RJI84_RS01870 WP_343189056.1 384586..385110(-) (ssb) [Buchnera aphidicola (Chaitoregma tattakana) strain Chata04]
ATGGCTAGTAGGGGAGTTAATAAAGTAATATTAATAGGAAATTTGGGGCAAGATCCAGAAGTAAGATATATGACTAATGG
AGTAGCTGTTGCTAATATGAATATAGCAACTTCTGAAACTTGGAAAGACAAAAACACTGGAGAAATAAGAGAGAAAACAG
AATGGCATAGAATTGTTTTGTTTAATAAACTCGCTGAAATTGCTAGAGAATATTTAAAAAAAGGAGCTCAAGTCTATATA
GAAGGATCTTTACAGACTAGAAAATGGCAAGATCAAAATAATATAGATAGATACACAACTGAAATAGTAGTTAATATAGG
TGGTACTATGCATATGCTTGGTAATAGAAATTCTAATGTATCTAATAATATAAGAAAAGAAGAAATTTCTTCACCAAACC
TTACTAAACAAAATAAAGATAATTTAAATATTATTAAAAAAGATGGTAAAGACAGTTATTCTAAAAAAGATATTTTGTTA
AATGAAAGAAATGAATCAGAATTTGATGATGAAATTCCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.249

100

0.575
  ssb Glaesserella parasuis strain SC1401

46.703

100

0.489
  ssb Neisseria meningitidis MC58

43.182

100

0.437
  ssb Neisseria gonorrhoeae MS11

43.182

100

0.437