Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJF23_RS01905 Genome accession   NZ_CP134988
Coordinates   376880..377404 (-) Length   174 a.a.
NCBI ID   WP_343189917.1    Uniprot ID   -
Organism   Buchnera aphidicola (Astegopteryx bambusae) strain Astba03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 371880..382404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJF23_RS01875 (RJF23_01875) rpe 372604..373278 (-) 675 WP_343191851.1 ribulose-phosphate 3-epimerase -
  RJF23_RS01880 (RJF23_01880) aroB 373315..374403 (-) 1089 WP_343191852.1 3-dehydroquinate synthase -
  RJF23_RS01885 (RJF23_01885) aroK 374439..374972 (-) 534 WP_343189914.1 shikimate kinase AroK -
  RJF23_RS01895 (RJF23_01895) - 375449..375901 (-) 453 WP_343189915.1 NifU family protein -
  RJF23_RS01900 (RJF23_01900) - 376076..376810 (+) 735 WP_343189916.1 hypothetical protein -
  RJF23_RS01905 (RJF23_01905) ssb 376880..377404 (-) 525 WP_343189917.1 single-stranded DNA-binding protein Machinery gene
  RJF23_RS01910 (RJF23_01910) dusA 377547..378548 (+) 1002 WP_343191853.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJF23_RS01915 (RJF23_01915) dnaB 378627..380021 (+) 1395 WP_343191854.1 replicative DNA helicase -
  RJF23_RS01920 (RJF23_01920) gshB 380135..381100 (+) 966 WP_343191855.1 glutathione synthase -
  RJF23_RS01925 (RJF23_01925) - 381139..381699 (+) 561 WP_343190123.1 YqgE/AlgH family protein -
  RJF23_RS01930 (RJF23_01930) ruvX 381702..382112 (+) 411 WP_343189921.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 20049.53 Da        Isoelectric Point: 9.2085

>NTDB_id=884432 RJF23_RS01905 WP_343189917.1 376880..377404(-) (ssb) [Buchnera aphidicola (Astegopteryx bambusae) strain Astba03]
MASRGINKVILIGHLGQDPEVRYMTNGIAVANMNIATSETWKDKNTGETREKTEWHRIVLFNKLAEIAREYLRKGSQVYI
EGSLQTRKWQDQNNMDRYTTEVVVNIGGTMKMLGNRNNNFSNNINDKNSVSKNLETSKKNVLEKDKIKKNDSYSKKDILS
NEINESEFDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=884432 RJF23_RS01905 WP_343189917.1 376880..377404(-) (ssb) [Buchnera aphidicola (Astegopteryx bambusae) strain Astba03]
ATGGCTAGTAGAGGAATTAATAAAGTAATATTAATAGGTCATTTAGGTCAAGATCCTGAAGTAAGATATATGACTAATGG
AATAGCTGTAGCTAATATGAATATTGCTACTTCTGAAACTTGGAAAGATAAAAATACTGGAGAAACTAGAGAAAAAACAG
AATGGCATAGAATTGTTTTGTTTAATAAGTTGGCTGAAATTGCTAGAGAATATTTGAGAAAAGGATCTCAAGTATATATA
GAGGGTTCTTTACAAACTAGAAAATGGCAGGATCAGAATAATATGGACAGATATACAACTGAAGTAGTTGTAAATATCGG
TGGAACTATGAAAATGCTTGGTAATAGAAATAATAATTTTTCTAATAATATTAATGATAAAAATAGTGTTTCTAAAAATT
TAGAAACTTCTAAAAAGAATGTTTTAGAAAAAGATAAAATTAAAAAAAATGATAGTTATTCTAAAAAAGATATTTTGTCA
AATGAAATTAATGAATCAGAATTTGATGATGAAATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.802

100

0.557
  ssb Glaesserella parasuis strain SC1401

44.262

100

0.466
  ssb Neisseria gonorrhoeae MS11

40.909

100

0.414
  ssb Neisseria meningitidis MC58

40.341

100

0.408